miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 61106 0.7 0.73461
Target:  5'- -gGAGGCCAGCgccacGUCCGCCagCGGc -3'
miRNA:   3'- ugCUCCGGUUGaaa--UAGGCGGg-GCUc -5'
6442 5' -55.2 NC_001847.1 + 46193 0.7 0.73461
Target:  5'- cGCGGuagcGGCCGGCggcggCCGCCgCCGGGc -3'
miRNA:   3'- -UGCU----CCGGUUGaaauaGGCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 102565 0.7 0.743508
Target:  5'- cGCGAcuaGGCgCAGCUUggcGUCCGCCaggucgcccagcgCCGAGg -3'
miRNA:   3'- -UGCU---CCG-GUUGAAa--UAGGCGG-------------GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 16762 0.7 0.744492
Target:  5'- cGCGAGGCCGAUgagaaugCCGCgCCGc- -3'
miRNA:   3'- -UGCUCCGGUUGaaaua--GGCGgGGCuc -5'
6442 5' -55.2 NC_001847.1 + 105132 0.69 0.754273
Target:  5'- gACGcGGCCAGCgcu-UCCGUCUCGGc -3'
miRNA:   3'- -UGCuCCGGUUGaaauAGGCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 64063 0.69 0.754273
Target:  5'- gACGcccuGGCCGGCcgccucgCCGCCCuCGAGg -3'
miRNA:   3'- -UGCu---CCGGUUGaaaua--GGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 20299 0.69 0.754273
Target:  5'- gGCGuuuGGUCAuuuGCUUUGUgaCCGCgCCGAGg -3'
miRNA:   3'- -UGCu--CCGGU---UGAAAUA--GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 18516 0.69 0.761054
Target:  5'- cCGAGGCCAGCgcUgcgggcgcgccgccGUCCGCgCCGcAGa -3'
miRNA:   3'- uGCUCCGGUUGaaA--------------UAGGCGgGGC-UC- -5'
6442 5' -55.2 NC_001847.1 + 134370 0.69 0.763943
Target:  5'- gACGAGGCCGGCg----CCGCCggcggCGGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCGGg----GCUC- -5'
6442 5' -55.2 NC_001847.1 + 31557 0.69 0.763943
Target:  5'- gACGAGGCCGGCg----CCGCCggcggCGGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCGGg----GCUC- -5'
6442 5' -55.2 NC_001847.1 + 82100 0.69 0.773492
Target:  5'- cGCGGGGCCAgGCUcggagCCGaggCCCGAGc -3'
miRNA:   3'- -UGCUCCGGU-UGAaaua-GGCg--GGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 34390 0.69 0.773492
Target:  5'- cGCGGGGCgAcCUggaccCCgGCCCCGAGa -3'
miRNA:   3'- -UGCUCCGgUuGAaaua-GG-CGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 11403 0.69 0.773492
Target:  5'- -aGAGGCCAugUUgcggcccCCGUCgCCGAGc -3'
miRNA:   3'- ugCUCCGGUugAAaua----GGCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 18701 0.69 0.773492
Target:  5'- cGCGuGcGCCAGCgcccaCCGCCCuCGAGc -3'
miRNA:   3'- -UGCuC-CGGUUGaaauaGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 10393 0.69 0.782912
Target:  5'- gGCGGGGCC-GCUUUAUgacggcCCGUCCCc-- -3'
miRNA:   3'- -UGCUCCGGuUGAAAUA------GGCGGGGcuc -5'
6442 5' -55.2 NC_001847.1 + 9894 0.69 0.792193
Target:  5'- uGCGAGGCCGucGCgcUcgUgGCCgCCGAGu -3'
miRNA:   3'- -UGCUCCGGU--UGaaAuaGgCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 45506 0.69 0.792193
Target:  5'- cCGGGGCgGGCg----CCGCCgCCGGGc -3'
miRNA:   3'- uGCUCCGgUUGaaauaGGCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 4036 0.69 0.792193
Target:  5'- cGCGGGGCC-GCUUUGguUCUGgUCCCGGc -3'
miRNA:   3'- -UGCUCCGGuUGAAAU--AGGC-GGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 118130 0.69 0.792193
Target:  5'- gGCGAGGCCGucugcgagGCgcgcUgCGuCCCCGAGg -3'
miRNA:   3'- -UGCUCCGGU--------UGaaauAgGC-GGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 90832 0.69 0.792193
Target:  5'- gGCGGGGCgagauCAGCgagcggCGCCCCGGGg -3'
miRNA:   3'- -UGCUCCG-----GUUGaaauagGCGGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.