miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 118979 0.68 0.810301
Target:  5'- cCGcGGCCAACggggcggUCGCCCCGGc -3'
miRNA:   3'- uGCuCCGGUUGaaaua--GGCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 118130 0.69 0.792193
Target:  5'- gGCGAGGCCGucugcgagGCgcgcUgCGuCCCCGAGg -3'
miRNA:   3'- -UGCUCCGGU--------UGaaauAgGC-GGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 117405 0.68 0.844458
Target:  5'- cGCGAGGCCGugg----CCGCCUCGu- -3'
miRNA:   3'- -UGCUCCGGUugaaauaGGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 117271 0.66 0.909148
Target:  5'- uGCGGGGCCGccgUUUUGgggcgccCCGCgCCCGAc -3'
miRNA:   3'- -UGCUCCGGUu--GAAAUa------GGCG-GGGCUc -5'
6442 5' -55.2 NC_001847.1 + 116765 0.77 0.365067
Target:  5'- cGCGGGGCCuGCUggGUCUGCgCCGAc -3'
miRNA:   3'- -UGCUCCGGuUGAaaUAGGCGgGGCUc -5'
6442 5' -55.2 NC_001847.1 + 115313 0.67 0.868024
Target:  5'- -aGGGGCUGACUgUGUucuuuuucugCCGCCCCGc- -3'
miRNA:   3'- ugCUCCGGUUGAaAUA----------GGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 115049 0.68 0.809411
Target:  5'- cCGGGGCagagcucCAGCUggcgCuCGCCCCGAGc -3'
miRNA:   3'- uGCUCCG-------GUUGAaauaG-GCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 114946 0.67 0.882656
Target:  5'- gGCGGGGCgGgGCg----CCGCCCCGcGg -3'
miRNA:   3'- -UGCUCCGgU-UGaaauaGGCGGGGCuC- -5'
6442 5' -55.2 NC_001847.1 + 112760 0.7 0.704455
Target:  5'- cCGcGGCCcgGGCgcu-UCUGCCCCGAGg -3'
miRNA:   3'- uGCuCCGG--UUGaaauAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 111543 0.71 0.668577
Target:  5'- cCGAGGCCcagccccggcaaaGGCaagguaagcgcAUCCGCCCCGGGg -3'
miRNA:   3'- uGCUCCGG-------------UUGaaa--------UAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 107028 0.73 0.539873
Target:  5'- aACGucGCCGGCcucgGUCCugGCCCCGAGg -3'
miRNA:   3'- -UGCucCGGUUGaaa-UAGG--CGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 106849 0.69 0.792193
Target:  5'- cGCGGGGCC-GCUUUGguUCUGgUCCCGGc -3'
miRNA:   3'- -UGCUCCGGuUGAAAU--AGGC-GGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 106386 0.66 0.909148
Target:  5'- gGCGc-GCCAGCUgcagGUCCggGCCCgCGAGc -3'
miRNA:   3'- -UGCucCGGUUGAaa--UAGG--CGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 105729 0.7 0.714582
Target:  5'- aGCGGGGCC-ACg--GUCCGCgCCGc- -3'
miRNA:   3'- -UGCUCCGGuUGaaaUAGGCGgGGCuc -5'
6442 5' -55.2 NC_001847.1 + 105132 0.69 0.754273
Target:  5'- gACGcGGCCAGCgcu-UCCGUCUCGGc -3'
miRNA:   3'- -UGCuCCGGUUGaaauAGGCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 103772 0.66 0.913391
Target:  5'- gACGAcugcgccggcacccGGCCGGCggggcuUCCGCCgCCGGc -3'
miRNA:   3'- -UGCU--------------CCGGUUGaaau--AGGCGG-GGCUc -5'
6442 5' -55.2 NC_001847.1 + 103574 0.72 0.62195
Target:  5'- gGCGAGGCCGGC-----CCGCCgCCGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCGG-GGCUc -5'
6442 5' -55.2 NC_001847.1 + 103437 0.67 0.888256
Target:  5'- cGCGcGGCCcGCgccuccccCCGcCCCCGAGg -3'
miRNA:   3'- -UGCuCCGGuUGaaaua---GGC-GGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 102889 0.67 0.875452
Target:  5'- gGCGggcccGGGCCcGCUcUGggcUCCGCCCCuGGGu -3'
miRNA:   3'- -UGC-----UCCGGuUGAaAU---AGGCGGGG-CUC- -5'
6442 5' -55.2 NC_001847.1 + 102565 0.7 0.743508
Target:  5'- cGCGAcuaGGCgCAGCUUggcGUCCGCCaggucgcccagcgCCGAGg -3'
miRNA:   3'- -UGCU---CCG-GUUGAAa--UAGGCGG-------------GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.