miRNA display CGI


Results 1 - 20 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 134370 0.69 0.763943
Target:  5'- gACGAGGCCGGCg----CCGCCggcggCGGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCGGg----GCUC- -5'
6442 5' -55.2 NC_001847.1 + 134244 0.67 0.850924
Target:  5'- gGCGGcGGCCGGCggccgcggCgGCCCCGGc -3'
miRNA:   3'- -UGCU-CCGGUUGaaaua---GgCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 134220 0.71 0.639587
Target:  5'- cCGAGGgCGGCggugggaaggccggGUCCGCCUCGAGc -3'
miRNA:   3'- uGCUCCgGUUGaaa-----------UAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 134036 0.66 0.920953
Target:  5'- -gGAGGCCGcgGCggcg-CCGCCCgCGGc -3'
miRNA:   3'- ugCUCCGGU--UGaaauaGGCGGG-GCUc -5'
6442 5' -55.2 NC_001847.1 + 133634 0.66 0.896375
Target:  5'- cCGAGGCCGccuacGCgcggcUCUaCCCCGAGg -3'
miRNA:   3'- uGCUCCGGU-----UGaaau-AGGcGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 132930 0.74 0.479811
Target:  5'- cGCGGcgcuggcGGCCuACUg---CCGCCCCGAGg -3'
miRNA:   3'- -UGCU-------CCGGuUGAaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 132704 0.66 0.913987
Target:  5'- gGCGAGGCggCGGCccugccggCCGCCgCGGGg -3'
miRNA:   3'- -UGCUCCG--GUUGaaaua---GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 131559 0.69 0.801326
Target:  5'- aACGAcGCCGACUUccUCaGCCCCGGc -3'
miRNA:   3'- -UGCUcCGGUUGAAauAGgCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 131447 0.68 0.827745
Target:  5'- cGCGGGGCCcGCggccgUGUUCGUgCCGGa -3'
miRNA:   3'- -UGCUCCGGuUGaa---AUAGGCGgGGCUc -5'
6442 5' -55.2 NC_001847.1 + 131388 0.72 0.611584
Target:  5'- cGCGAgGGCCu-CUggGaCUGCCCCGAGa -3'
miRNA:   3'- -UGCU-CCGGuuGAaaUaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 130936 0.73 0.529833
Target:  5'- cCGAGGCCGGCgacGUUgGgCCCGAGg -3'
miRNA:   3'- uGCUCCGGUUGaaaUAGgCgGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 130516 0.71 0.694265
Target:  5'- cGCGAGcGCCGGCgggccgcCCGCgCCGAGc -3'
miRNA:   3'- -UGCUC-CGGUUGaaaua--GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 129334 0.67 0.89168
Target:  5'- cGCGGGGCCGggggcguucggccauGCUUUcaugcaaAUgaGCCCCGAc -3'
miRNA:   3'- -UGCUCCGGU---------------UGAAA-------UAggCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 127009 0.67 0.85252
Target:  5'- cGCGAGGCUcgucGGCccgc-CCGCCCCGcGg -3'
miRNA:   3'- -UGCUCCGG----UUGaaauaGGCGGGGCuC- -5'
6442 5' -55.2 NC_001847.1 + 124438 0.71 0.673734
Target:  5'- gGCGcuuGGCCGGCgcgggCCGCgCCCGGGc -3'
miRNA:   3'- -UGCu--CCGGUUGaaauaGGCG-GGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 123890 0.72 0.629212
Target:  5'- gGCGGGGcCCGACUguccccUUccccccucccccccGUCCGCCCgCGAGu -3'
miRNA:   3'- -UGCUCC-GGUUGA------AA--------------UAGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 123559 0.67 0.875452
Target:  5'- aACGGGGCUugGGCcggggCCGCCgCGAGc -3'
miRNA:   3'- -UGCUCCGG--UUGaaauaGGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 123505 0.66 0.920953
Target:  5'- aGCGGGGCCGggGCcagggCUGCCgCGGGc -3'
miRNA:   3'- -UGCUCCGGU--UGaaauaGGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 122774 0.66 0.920953
Target:  5'- cCGAGGCCGcaGCcgccgaCGCuCCCGAGc -3'
miRNA:   3'- uGCUCCGGU--UGaaauagGCG-GGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 120312 0.67 0.85252
Target:  5'- uGCGGGGCCGGCUgauuuUCCuggaacaccaGCuCCCGGc -3'
miRNA:   3'- -UGCUCCGGUUGAaau--AGG----------CG-GGGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.