miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6447 3' -56.3 NC_001847.1 + 68914 0.66 0.857463
Target:  5'- --gCCGCCgCGCUGaggUUCGGCgcggcggccgcgGGCUGc -3'
miRNA:   3'- uuaGGCGG-GCGAUga-AAGUCG------------CCGAC- -5'
6447 3' -56.3 NC_001847.1 + 5469 0.66 0.857463
Target:  5'- --gCCGCUCuCUGCgg-CGGCGGCa- -3'
miRNA:   3'- uuaGGCGGGcGAUGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 86531 0.66 0.857463
Target:  5'- ---gCGCCCGCgUGCUggCGgcGCGGCUu -3'
miRNA:   3'- uuagGCGGGCG-AUGAaaGU--CGCCGAc -5'
6447 3' -56.3 NC_001847.1 + 1232 0.66 0.850258
Target:  5'- --gCCGCCCGCaggccagguacaccgGCcg-CAGCGGCg- -3'
miRNA:   3'- uuaGGCGGGCGa--------------UGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 104045 0.66 0.850258
Target:  5'- --gCCGCCCGCaggccagguacaccgGCcg-CAGCGGCg- -3'
miRNA:   3'- uuaGGCGGGCGa--------------UGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 77339 0.66 0.849446
Target:  5'- --aCUGCgCGCUGCUg--GGCGGCg- -3'
miRNA:   3'- uuaGGCGgGCGAUGAaagUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 92655 0.66 0.849446
Target:  5'- -uUUCGCCCGCaGCgcUUCGGCGcGCc- -3'
miRNA:   3'- uuAGGCGGGCGaUGa-AAGUCGC-CGac -5'
6447 3' -56.3 NC_001847.1 + 82963 0.66 0.849446
Target:  5'- --gCCGCCUGCgauCUgu-GGUGGCUGc -3'
miRNA:   3'- uuaGGCGGGCGau-GAaagUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 123829 0.66 0.849446
Target:  5'- --gCCGCCCGCcgGCc-UCGGCgGGCg- -3'
miRNA:   3'- uuaGGCGGGCGa-UGaaAGUCG-CCGac -5'
6447 3' -56.3 NC_001847.1 + 105812 0.66 0.849446
Target:  5'- --gCCGCCCGCgcACUcgCGcucGCGGCUc -3'
miRNA:   3'- uuaGGCGGGCGa-UGAaaGU---CGCCGAc -5'
6447 3' -56.3 NC_001847.1 + 97871 0.66 0.849446
Target:  5'- --gCgGCCCGCgucccagUCGGCGGCg- -3'
miRNA:   3'- uuaGgCGGGCGaugaa--AGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 79141 0.66 0.849446
Target:  5'- -uUgCGCCCGCUGCg--CAGguacuCGGCUu -3'
miRNA:   3'- uuAgGCGGGCGAUGaaaGUC-----GCCGAc -5'
6447 3' -56.3 NC_001847.1 + 14653 0.66 0.842055
Target:  5'- --gCCGCUCGCUGCgagcggggcgcgugUCGGCGuGCa- -3'
miRNA:   3'- uuaGGCGGGCGAUGaa------------AGUCGC-CGac -5'
6447 3' -56.3 NC_001847.1 + 5951 0.66 0.841223
Target:  5'- --cCCGCCCGCUGCUUcUAGCc---- -3'
miRNA:   3'- uuaGGCGGGCGAUGAAaGUCGccgac -5'
6447 3' -56.3 NC_001847.1 + 60130 0.66 0.841223
Target:  5'- -uUCUGCCCGCUggccccccGCccgcCGGCGGaCUGa -3'
miRNA:   3'- uuAGGCGGGCGA--------UGaaa-GUCGCC-GAC- -5'
6447 3' -56.3 NC_001847.1 + 125028 0.66 0.841223
Target:  5'- --cCCGCUCGCcGCgaa-GGCGGCUu -3'
miRNA:   3'- uuaGGCGGGCGaUGaaagUCGCCGAc -5'
6447 3' -56.3 NC_001847.1 + 46100 0.66 0.841223
Target:  5'- --cCCgGCCCGCUuccg-CGGgGGCUGg -3'
miRNA:   3'- uuaGG-CGGGCGAugaaaGUCgCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 11568 0.66 0.832801
Target:  5'- cGGUCCGgcCCCGCU-Cg--CGGCGGCc- -3'
miRNA:   3'- -UUAGGC--GGGCGAuGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 108709 0.66 0.832801
Target:  5'- --gCCuaCCGCUGCcccgUCucGCGGCUGg -3'
miRNA:   3'- uuaGGcgGGCGAUGaa--AGu-CGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 37581 0.66 0.832801
Target:  5'- --gCUGgCCGCUGCggcugCGGCGGCc- -3'
miRNA:   3'- uuaGGCgGGCGAUGaaa--GUCGCCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.