Results 1 - 20 of 524 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6447 | 5' | -62.9 | NC_001847.1 | + | 68911 | 0.66 | 0.588604 |
Target: 5'- aGCGcCGCCGCGCUGagguuCGGcGCGGcGGc -3' miRNA: 3'- cCGUcGCGGCGCGAC-----GCCuUGCC-CCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 93744 | 0.66 | 0.59838 |
Target: 5'- cGGCAGCuggagGCCGCGCgGCuGccGGCGGcGGc -3' miRNA: 3'- -CCGUCG-----CGGCGCGaCGcC--UUGCC-CCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 117293 | 0.66 | 0.577884 |
Target: 5'- cGGCGGCgcuggcaacgcgaGCCGCGauggGCGaccuagcGGCGGGGGg -3' miRNA: 3'- -CCGUCG-------------CGGCGCga--CGCc------UUGCCCCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 77304 | 0.66 | 0.578857 |
Target: 5'- gGGUacAGCGCCuucaugggGuUGCUGCGGAGgCGGGa- -3' miRNA: 3'- -CCG--UCGCGG--------C-GCGACGCCUU-GCCCcu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 29403 | 0.66 | 0.578857 |
Target: 5'- aGGCG--GCCGCGCUgGCGGcGCGGa-- -3' miRNA: 3'- -CCGUcgCGGCGCGA-CGCCuUGCCccu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 129373 | 0.66 | 0.578857 |
Target: 5'- gGGCuAGaCGCCGCGCUucGCGuuggcgcgccGGACGGcGGu -3' miRNA: 3'- -CCG-UC-GCGGCGCGA--CGC----------CUUGCC-CCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 116164 | 0.66 | 0.586652 |
Target: 5'- uGGCGGCcgcgggcgccgcgGCCGCGCUGgucgucgccgccaCGGAcgccGCGGcGGc -3' miRNA: 3'- -CCGUCG-------------CGGCGCGAC-------------GCCU----UGCC-CCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 134195 | 0.66 | 0.587628 |
Target: 5'- cGCAGCGUggagcggCGCGC-GCGGGccgagggcgGCGGuGGGa -3' miRNA: 3'- cCGUCGCG-------GCGCGaCGCCU---------UGCC-CCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 32567 | 0.66 | 0.588604 |
Target: 5'- aGGaUGGCGCCGCccgccGCUGCcccaGAGCuGGGAu -3' miRNA: 3'- -CC-GUCGCGGCG-----CGACGc---CUUGcCCCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 74496 | 0.66 | 0.588604 |
Target: 5'- uGCAGCaGCCGCGcCUGCGccGCGcgcuGGAc -3' miRNA: 3'- cCGUCG-CGGCGC-GACGCcuUGCc---CCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 60876 | 0.66 | 0.588604 |
Target: 5'- cGCAGCG-CGCGC-GCGGGccccagcaGCGGcGGc -3' miRNA: 3'- cCGUCGCgGCGCGaCGCCU--------UGCC-CCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 96190 | 0.66 | 0.59838 |
Target: 5'- cGGCAGCGgCaaugGCGggGcCGGAGuCGGGGc -3' miRNA: 3'- -CCGUCGCgG----CGCgaC-GCCUU-GCCCCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 132976 | 0.66 | 0.588604 |
Target: 5'- aGGCGGCGCgGgCGCUGCGaGACcuGGu -3' miRNA: 3'- -CCGUCGCGgC-GCGACGCcUUGccCCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 1386 | 0.66 | 0.588604 |
Target: 5'- cGGCAGCacGCgcugccgguacuCGCGCgGCGGcACGGGc- -3' miRNA: 3'- -CCGUCG--CG------------GCGCGaCGCCuUGCCCcu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 96780 | 0.66 | 0.594466 |
Target: 5'- -cCGGUGCCgGCGCUGgGGcugaagcuggguCGGGGGg -3' miRNA: 3'- ccGUCGCGG-CGCGACgCCuu----------GCCCCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 73507 | 0.66 | 0.597401 |
Target: 5'- uGGCGGCGCUGCaGUccaGCGGGcgcauguACGuGGGc -3' miRNA: 3'- -CCGUCGCGGCG-CGa--CGCCU-------UGC-CCCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 56741 | 0.66 | 0.59838 |
Target: 5'- aGCAGCGCgCcCGCaGCGG--CGGGGu -3' miRNA: 3'- cCGUCGCG-GcGCGaCGCCuuGCCCCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 111349 | 0.66 | 0.59838 |
Target: 5'- cGGUGGcCGCCGCGCUGgGcGAccucGCGcccGGGc -3' miRNA: 3'- -CCGUC-GCGGCGCGACgC-CU----UGC---CCCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 127205 | 0.66 | 0.59838 |
Target: 5'- gGGCuaCGCCGCaaGCUGCaaaacGGCGGGGGa -3' miRNA: 3'- -CCGucGCGGCG--CGACGcc---UUGCCCCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 32380 | 0.66 | 0.59838 |
Target: 5'- cGGCgucgcgGGCGUCGCGCcuUGCG---UGGGGGg -3' miRNA: 3'- -CCG------UCGCGGCGCG--ACGCcuuGCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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