miRNA display CGI


Results 1 - 20 of 524 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6447 5' -62.9 NC_001847.1 + 93744 0.66 0.59838
Target:  5'- cGGCAGCuggagGCCGCGCgGCuGccGGCGGcGGc -3'
miRNA:   3'- -CCGUCG-----CGGCGCGaCGcC--UUGCC-CCu -5'
6447 5' -62.9 NC_001847.1 + 74496 0.66 0.588604
Target:  5'- uGCAGCaGCCGCGcCUGCGccGCGcgcuGGAc -3'
miRNA:   3'- cCGUCG-CGGCGC-GACGCcuUGCc---CCU- -5'
6447 5' -62.9 NC_001847.1 + 32567 0.66 0.588604
Target:  5'- aGGaUGGCGCCGCccgccGCUGCcccaGAGCuGGGAu -3'
miRNA:   3'- -CC-GUCGCGGCG-----CGACGc---CUUGcCCCU- -5'
6447 5' -62.9 NC_001847.1 + 134195 0.66 0.587628
Target:  5'- cGCAGCGUggagcggCGCGC-GCGGGccgagggcgGCGGuGGGa -3'
miRNA:   3'- cCGUCGCG-------GCGCGaCGCCU---------UGCC-CCU- -5'
6447 5' -62.9 NC_001847.1 + 116164 0.66 0.586652
Target:  5'- uGGCGGCcgcgggcgccgcgGCCGCGCUGgucgucgccgccaCGGAcgccGCGGcGGc -3'
miRNA:   3'- -CCGUCG-------------CGGCGCGAC-------------GCCU----UGCC-CCu -5'
6447 5' -62.9 NC_001847.1 + 129373 0.66 0.578857
Target:  5'- gGGCuAGaCGCCGCGCUucGCGuuggcgcgccGGACGGcGGu -3'
miRNA:   3'- -CCG-UC-GCGGCGCGA--CGC----------CUUGCC-CCu -5'
6447 5' -62.9 NC_001847.1 + 29403 0.66 0.578857
Target:  5'- aGGCG--GCCGCGCUgGCGGcGCGGa-- -3'
miRNA:   3'- -CCGUcgCGGCGCGA-CGCCuUGCCccu -5'
6447 5' -62.9 NC_001847.1 + 77304 0.66 0.578857
Target:  5'- gGGUacAGCGCCuucaugggGuUGCUGCGGAGgCGGGa- -3'
miRNA:   3'- -CCG--UCGCGG--------C-GCGACGCCUU-GCCCcu -5'
6447 5' -62.9 NC_001847.1 + 117293 0.66 0.577884
Target:  5'- cGGCGGCgcuggcaacgcgaGCCGCGauggGCGaccuagcGGCGGGGGg -3'
miRNA:   3'- -CCGUCG-------------CGGCGCga--CGCc------UUGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 60876 0.66 0.588604
Target:  5'- cGCAGCG-CGCGC-GCGGGccccagcaGCGGcGGc -3'
miRNA:   3'- cCGUCGCgGCGCGaCGCCU--------UGCC-CCu -5'
6447 5' -62.9 NC_001847.1 + 68911 0.66 0.588604
Target:  5'- aGCGcCGCCGCGCUGagguuCGGcGCGGcGGc -3'
miRNA:   3'- cCGUcGCGGCGCGAC-----GCCuUGCC-CCu -5'
6447 5' -62.9 NC_001847.1 + 132976 0.66 0.588604
Target:  5'- aGGCGGCGCgGgCGCUGCGaGACcuGGu -3'
miRNA:   3'- -CCGUCGCGgC-GCGACGCcUUGccCCu -5'
6447 5' -62.9 NC_001847.1 + 118473 0.66 0.59838
Target:  5'- uGCGGCGCaaggcccgggCGCGcCUGUaGGcGCGGGGc -3'
miRNA:   3'- cCGUCGCG----------GCGC-GACG-CCuUGCCCCu -5'
6447 5' -62.9 NC_001847.1 + 32380 0.66 0.59838
Target:  5'- cGGCgucgcgGGCGUCGCGCcuUGCG---UGGGGGg -3'
miRNA:   3'- -CCG------UCGCGGCGCG--ACGCcuuGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 127205 0.66 0.59838
Target:  5'- gGGCuaCGCCGCaaGCUGCaaaacGGCGGGGGa -3'
miRNA:   3'- -CCGucGCGGCG--CGACGcc---UUGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 111349 0.66 0.59838
Target:  5'- cGGUGGcCGCCGCGCUGgGcGAccucGCGcccGGGc -3'
miRNA:   3'- -CCGUC-GCGGCGCGACgC-CU----UGC---CCCu -5'
6447 5' -62.9 NC_001847.1 + 56741 0.66 0.59838
Target:  5'- aGCAGCGCgCcCGCaGCGG--CGGGGu -3'
miRNA:   3'- cCGUCGCG-GcGCGaCGCCuuGCCCCu -5'
6447 5' -62.9 NC_001847.1 + 73507 0.66 0.597401
Target:  5'- uGGCGGCGCUGCaGUccaGCGGGcgcauguACGuGGGc -3'
miRNA:   3'- -CCGUCGCGGCG-CGa--CGCCU-------UGC-CCCu -5'
6447 5' -62.9 NC_001847.1 + 96780 0.66 0.594466
Target:  5'- -cCGGUGCCgGCGCUGgGGcugaagcuggguCGGGGGg -3'
miRNA:   3'- ccGUCGCGG-CGCGACgCCuu----------GCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 1386 0.66 0.588604
Target:  5'- cGGCAGCacGCgcugccgguacuCGCGCgGCGGcACGGGc- -3'
miRNA:   3'- -CCGUCG--CG------------GCGCGaCGCCuUGCCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.