miRNA display CGI


Results 1 - 20 of 524 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6447 5' -62.9 NC_001847.1 + 8 0.68 0.431057
Target:  5'- cGCcGCGCCGCGCgggcccccUGCGacccCGGGGGg -3'
miRNA:   3'- cCGuCGCGGCGCG--------ACGCcuu-GCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 49 0.73 0.2454
Target:  5'- cGCGGCG-CGUGCauUGCGGcgGGCGGGGGc -3'
miRNA:   3'- cCGUCGCgGCGCG--ACGCC--UUGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 473 0.71 0.328669
Target:  5'- cGGCGGCGgCaGCaGCgGCGGcGGCGGGGc -3'
miRNA:   3'- -CCGUCGCgG-CG-CGaCGCC-UUGCCCCu -5'
6447 5' -62.9 NC_001847.1 + 1110 0.68 0.484197
Target:  5'- gGGCGGCGCCGC-C-GCGGccuccagcaccAGCGGcGGc -3'
miRNA:   3'- -CCGUCGCGGCGcGaCGCC-----------UUGCC-CCu -5'
6447 5' -62.9 NC_001847.1 + 1386 0.66 0.588604
Target:  5'- cGGCAGCacGCgcugccgguacuCGCGCgGCGGcACGGGc- -3'
miRNA:   3'- -CCGUCG--CG------------GCGCGaCGCCuUGCCCcu -5'
6447 5' -62.9 NC_001847.1 + 1480 0.71 0.301
Target:  5'- cGGCAGaGCCGCaGCgGCGGcgccuCGGGGu -3'
miRNA:   3'- -CCGUCgCGGCG-CGaCGCCuu---GCCCCu -5'
6447 5' -62.9 NC_001847.1 + 1971 0.69 0.414114
Target:  5'- gGGCGGCGCCGCcaGCgccucccCGGcAGCGGGu- -3'
miRNA:   3'- -CCGUCGCGGCG--CGac-----GCC-UUGCCCcu -5'
6447 5' -62.9 NC_001847.1 + 2056 0.68 0.484197
Target:  5'- aGGCcacGCGCCGcCGCaGCGGuGGCGGcGAg -3'
miRNA:   3'- -CCGu--CGCGGC-GCGaCGCC-UUGCCcCU- -5'
6447 5' -62.9 NC_001847.1 + 2146 0.71 0.294369
Target:  5'- aGGCgAGCGCCGgGCgccaGGGcuCGGGGAa -3'
miRNA:   3'- -CCG-UCGCGGCgCGacg-CCUu-GCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 2173 0.71 0.307745
Target:  5'- cGCAGCGcCCGCGCcgccuggGCGGcguGCGGGc- -3'
miRNA:   3'- cCGUCGC-GGCGCGa------CGCCu--UGCCCcu -5'
6447 5' -62.9 NC_001847.1 + 2221 0.66 0.559475
Target:  5'- aGGCcgccAGCGCCgcgGCGCUG-GGcGCGGGc- -3'
miRNA:   3'- -CCG----UCGCGG---CGCGACgCCuUGCCCcu -5'
6447 5' -62.9 NC_001847.1 + 2296 0.67 0.530762
Target:  5'- cGGCGGgGCCGCcggGCGGcAUGGGc- -3'
miRNA:   3'- -CCGUCgCGGCGcgaCGCCuUGCCCcu -5'
6447 5' -62.9 NC_001847.1 + 2540 0.68 0.484197
Target:  5'- cGGCGGCGCuCcCGCcGcCGGGcCGGGGc -3'
miRNA:   3'- -CCGUCGCG-GcGCGaC-GCCUuGCCCCu -5'
6447 5' -62.9 NC_001847.1 + 2884 0.75 0.171881
Target:  5'- gGGCcgccGCGCCGCGCgucgaguaccGCGcGAGCGGGGc -3'
miRNA:   3'- -CCGu---CGCGGCGCGa---------CGC-CUUGCCCCu -5'
6447 5' -62.9 NC_001847.1 + 3147 0.72 0.256972
Target:  5'- cGGCGGCGCCG-GCgGCGcGGCGGGc- -3'
miRNA:   3'- -CCGUCGCGGCgCGaCGCcUUGCCCcu -5'
6447 5' -62.9 NC_001847.1 + 3718 0.68 0.454559
Target:  5'- cGCGGcCGCCGCGUagcgcgcggccgccUcGCGGAucuCGGGGc -3'
miRNA:   3'- cCGUC-GCGGCGCG--------------A-CGCCUu--GCCCCu -5'
6447 5' -62.9 NC_001847.1 + 3817 0.68 0.439679
Target:  5'- cGGCGGCGgCGCGCUGC----CGGGc- -3'
miRNA:   3'- -CCGUCGCgGCGCGACGccuuGCCCcu -5'
6447 5' -62.9 NC_001847.1 + 3924 0.7 0.343193
Target:  5'- cGGUugcGCGcCCGCGCUgGCGccgcGGCGGGGGg -3'
miRNA:   3'- -CCGu--CGC-GGCGCGA-CGCc---UUGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 3970 0.67 0.49244
Target:  5'- cGGCGGCgagggcgccggggGCCGgGCgcGCGGccccGCGGGGc -3'
miRNA:   3'- -CCGUCG-------------CGGCgCGa-CGCCu---UGCCCCu -5'
6447 5' -62.9 NC_001847.1 + 4555 0.66 0.54985
Target:  5'- gGGUGGCGCgGCGUggaaGUGGAagugguGCGGGu- -3'
miRNA:   3'- -CCGUCGCGgCGCGa---CGCCU------UGCCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.