miRNA display CGI


Results 1 - 20 of 524 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6447 5' -62.9 NC_001847.1 + 54653 1.1 0.000514
Target:  5'- cGGCAGCGCCGCGCUGCGGAACGGGGAg -3'
miRNA:   3'- -CCGUCGCGGCGCGACGCCUUGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 69454 0.85 0.037251
Target:  5'- cGGCGGCGCgCGCGCgGCGGcGGCGGGGc -3'
miRNA:   3'- -CCGUCGCG-GCGCGaCGCC-UUGCCCCu -5'
6447 5' -62.9 NC_001847.1 + 51506 0.84 0.039255
Target:  5'- aGCAGCGCCGCGCcggUGCGGcgccggcaGGCGGGGGc -3'
miRNA:   3'- cCGUCGCGGCGCG---ACGCC--------UUGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 58461 0.82 0.053688
Target:  5'- cGCAGCGCCGCGC-GCGuGAACGGGu- -3'
miRNA:   3'- cCGUCGCGGCGCGaCGC-CUUGCCCcu -5'
6447 5' -62.9 NC_001847.1 + 89941 0.82 0.059405
Target:  5'- cGGCGGCGCuCGCGCUGCGaGAcgacugccagcgcGCGGcGGAa -3'
miRNA:   3'- -CCGUCGCG-GCGCGACGC-CU-------------UGCC-CCU- -5'
6447 5' -62.9 NC_001847.1 + 68793 0.81 0.064366
Target:  5'- cGCGGCgGCCGCGCgaGCGGGccgACGGGGGg -3'
miRNA:   3'- cCGUCG-CGGCGCGa-CGCCU---UGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 15788 0.81 0.069546
Target:  5'- cGGCaAGCGCCGCGCgGCGGGagGCGGcGGu -3'
miRNA:   3'- -CCG-UCGCGGCGCGaCGCCU--UGCC-CCu -5'
6447 5' -62.9 NC_001847.1 + 34406 0.8 0.07708
Target:  5'- cGGCAGaCGCgGCGCUG-GGGGCGGcGGAa -3'
miRNA:   3'- -CCGUC-GCGgCGCGACgCCUUGCC-CCU- -5'
6447 5' -62.9 NC_001847.1 + 69032 0.79 0.085392
Target:  5'- cGguGCGUCGCGCUGuCGGcguACGGGGGc -3'
miRNA:   3'- cCguCGCGGCGCGAC-GCCu--UGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 130766 0.79 0.094553
Target:  5'- cGCGGCGCgCGCGCUcGCGGucGCGGuGGAg -3'
miRNA:   3'- cCGUCGCG-GCGCGA-CGCCu-UGCC-CCU- -5'
6447 5' -62.9 NC_001847.1 + 27953 0.79 0.094553
Target:  5'- cGCGGCGCgCGCGCUcGCGGucGCGGuGGAg -3'
miRNA:   3'- cCGUCGCG-GCGCGA-CGCCu-UGCC-CCU- -5'
6447 5' -62.9 NC_001847.1 + 34169 0.79 0.096985
Target:  5'- aGGCGGCuGagGCGCUGCGGGcCGGGGGc -3'
miRNA:   3'- -CCGUCG-CggCGCGACGCCUuGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 113695 0.78 0.10464
Target:  5'- cGGCugccGCGuCCGCG-UGCGGGACGGGGu -3'
miRNA:   3'- -CCGu---CGC-GGCGCgACGCCUUGCCCCu -5'
6447 5' -62.9 NC_001847.1 + 104532 0.78 0.10464
Target:  5'- uGCGGCGCUGCGCgGCGGcccCGGGGc -3'
miRNA:   3'- cCGUCGCGGCGCGaCGCCuu-GCCCCu -5'
6447 5' -62.9 NC_001847.1 + 99793 0.78 0.10464
Target:  5'- gGGCAGCGCCuGUGgUGCGGGGucggagcggcCGGGGGc -3'
miRNA:   3'- -CCGUCGCGG-CGCgACGCCUU----------GCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 88244 0.78 0.110056
Target:  5'- aGGcCGGCGCgGCGCgggGCGccGGGCGGGGAc -3'
miRNA:   3'- -CC-GUCGCGgCGCGa--CGC--CUUGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 52491 0.78 0.112861
Target:  5'- cGGC-GCGCCGCGCUcGCGGGuuCGGGuGGc -3'
miRNA:   3'- -CCGuCGCGGCGCGA-CGCCUu-GCCC-CU- -5'
6447 5' -62.9 NC_001847.1 + 100648 0.78 0.112861
Target:  5'- cGGCgccAGgGCCGCGCUGCuGcGGCGGGGGg -3'
miRNA:   3'- -CCG---UCgCGGCGCGACGcC-UUGCCCCU- -5'
6447 5' -62.9 NC_001847.1 + 61302 0.78 0.112861
Target:  5'- cGGCGGCGUuuuuaUGCGCgggugcGCGGGGCGGGGc -3'
miRNA:   3'- -CCGUCGCG-----GCGCGa-----CGCCUUGCCCCu -5'
6447 5' -62.9 NC_001847.1 + 30991 0.78 0.115442
Target:  5'- uGGCcgcgcagGGCGCgGCGCUGgGGcuCGGGGAg -3'
miRNA:   3'- -CCG-------UCGCGgCGCGACgCCuuGCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.