miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6456 3' -54.2 NC_001847.1 + 39386 0.66 0.955192
Target:  5'- --cGCCGUcGGGGAGccggcGCCGGccGGGcUCCu -3'
miRNA:   3'- guaUGGCGaUUCCUC-----UGGCC--UCC-AGG- -5'
6456 3' -54.2 NC_001847.1 + 3971 0.66 0.955192
Target:  5'- --gGCgGC-GAGGGcGCCGGGGG-CCg -3'
miRNA:   3'- guaUGgCGaUUCCUcUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 12946 0.66 0.955192
Target:  5'- uCGUGCgG-UGGGGcggcGGGCCGGGGGUggcCCg -3'
miRNA:   3'- -GUAUGgCgAUUCC----UCUGGCCUCCA---GG- -5'
6456 3' -54.2 NC_001847.1 + 29372 0.66 0.955192
Target:  5'- --gACCGCgc-GGcGGCCGGAGcugCCg -3'
miRNA:   3'- guaUGGCGauuCCuCUGGCCUCca-GG- -5'
6456 3' -54.2 NC_001847.1 + 18011 0.66 0.954799
Target:  5'- --gGCUGUUGggcguGGGGGgcguugcGCCGGuGGUCCc -3'
miRNA:   3'- guaUGGCGAU-----UCCUC-------UGGCCuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 32958 0.66 0.951154
Target:  5'- -----gGCgGAGGAGGCCGGGGaGgCCa -3'
miRNA:   3'- guauggCGaUUCCUCUGGCCUC-CaGG- -5'
6456 3' -54.2 NC_001847.1 + 59038 0.66 0.951154
Target:  5'- gGUGCgGCggcgGAGGAGAgUGGuGGUg- -3'
miRNA:   3'- gUAUGgCGa---UUCCUCUgGCCuCCAgg -5'
6456 3' -54.2 NC_001847.1 + 134098 0.66 0.946879
Target:  5'- --cGCCGCUugcucuGGcGAgCaGAGGUCCa -3'
miRNA:   3'- guaUGGCGAuu----CCuCUgGcCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 110013 0.66 0.946879
Target:  5'- --gGCCGUgGAGGcGAUcaccaCGGAGGUCg -3'
miRNA:   3'- guaUGGCGaUUCCuCUG-----GCCUCCAGg -5'
6456 3' -54.2 NC_001847.1 + 100741 0.66 0.946879
Target:  5'- --cGCCGagcucucGGGGCCGG-GGUCCa -3'
miRNA:   3'- guaUGGCgauuc--CUCUGGCCuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 54705 0.66 0.942364
Target:  5'- ---cCCGCgggGAGGAcGACgCGcGGGUCCc -3'
miRNA:   3'- guauGGCGa--UUCCU-CUG-GCcUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 29646 0.66 0.942364
Target:  5'- --cGCCGC--GGGcGGAcCCGGAggacgGGUCCg -3'
miRNA:   3'- guaUGGCGauUCC-UCU-GGCCU-----CCAGG- -5'
6456 3' -54.2 NC_001847.1 + 106437 0.66 0.942364
Target:  5'- --cGCCGCgcacaAAGGGGucCCGGuAGG-CCa -3'
miRNA:   3'- guaUGGCGa----UUCCUCu-GGCC-UCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 35197 0.66 0.942364
Target:  5'- gAUugUGCgaaguGGGAugGACUGGgcgGGGUCCg -3'
miRNA:   3'- gUAugGCGau---UCCU--CUGGCC---UCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 132459 0.66 0.942364
Target:  5'- --cGCCGC--GGGcGGAcCCGGAggacgGGUCCg -3'
miRNA:   3'- guaUGGCGauUCC-UCU-GGCCU-----CCAGG- -5'
6456 3' -54.2 NC_001847.1 + 69290 0.66 0.937607
Target:  5'- --cGCCGCgcAGGaAGGCguCGuaGAGGUCCg -3'
miRNA:   3'- guaUGGCGauUCC-UCUG--GC--CUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 70764 0.66 0.937607
Target:  5'- --gGCCGUUGGGGAccGGCUaguguuuuuGGAGGcCCu -3'
miRNA:   3'- guaUGGCGAUUCCU--CUGG---------CCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 50109 0.66 0.937607
Target:  5'- --aGCUGCUGGGGgccGGGCUGGGGcuGUCg -3'
miRNA:   3'- guaUGGCGAUUCC---UCUGGCCUC--CAGg -5'
6456 3' -54.2 NC_001847.1 + 42955 0.66 0.936133
Target:  5'- --cGCCGCgcgcgGGGGGGGCgGGccgccggccggcccGGGUUCg -3'
miRNA:   3'- guaUGGCGa----UUCCUCUGgCC--------------UCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 56588 0.66 0.934636
Target:  5'- uGUGCCGCUGAGcGAcugcgugaucgaagaGGCCG-AGG-CCg -3'
miRNA:   3'- gUAUGGCGAUUC-CU---------------CUGGCcUCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.