miRNA display CGI


Results 21 - 40 of 331 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 3' -56.8 NC_001847.1 + 70345 0.75 0.383707
Target:  5'- gGUGGCGCGUUUGCaagUAGCUCCAg -3'
miRNA:   3'- gCGUCGCGCAAGCGcuaGUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 32765 0.74 0.392115
Target:  5'- gGCGGCGC-UUCGCGA-CGGCcggCCGCu -3'
miRNA:   3'- gCGUCGCGcAAGCGCUaGUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 130765 0.74 0.392115
Target:  5'- cCGCGGCGCGcgcgcUCGCGGUCgcgguggaGGCggCCGCg -3'
miRNA:   3'- -GCGUCGCGCa----AGCGCUAG--------UCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 123073 0.74 0.392115
Target:  5'- cCGCGGCGCuc-CGCGGccUCGGCgUCCGCa -3'
miRNA:   3'- -GCGUCGCGcaaGCGCU--AGUCG-AGGUG- -5'
6474 3' -56.8 NC_001847.1 + 27952 0.74 0.392115
Target:  5'- cCGCGGCGCGcgcgcUCGCGGUCgcgguggaGGCggCCGCg -3'
miRNA:   3'- -GCGUCGCGCa----AGCGCUAG--------UCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 115783 0.74 0.409285
Target:  5'- gGcCAGaGCGUUCGCGGagccgcugCGGCUCCGCg -3'
miRNA:   3'- gC-GUCgCGCAAGCGCUa-------GUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 18494 0.74 0.418045
Target:  5'- uCGUAGCGCGcgCGCGccagCAGCUCUg- -3'
miRNA:   3'- -GCGUCGCGCaaGCGCua--GUCGAGGug -5'
6474 3' -56.8 NC_001847.1 + 59705 0.74 0.426917
Target:  5'- aGCAGCcaggacuccGCGgUCGCGAUCGcGCUCgGCg -3'
miRNA:   3'- gCGUCG---------CGCaAGCGCUAGU-CGAGgUG- -5'
6474 3' -56.8 NC_001847.1 + 60875 0.73 0.4359
Target:  5'- gCGCAGCGCGcgCGCGGgccccagCAGCggCgGCa -3'
miRNA:   3'- -GCGUCGCGCaaGCGCUa------GUCGa-GgUG- -5'
6474 3' -56.8 NC_001847.1 + 113931 0.73 0.454188
Target:  5'- aGCAGCGCGcggUCGCGG-CGGCgucucCUACg -3'
miRNA:   3'- gCGUCGCGCa--AGCGCUaGUCGa----GGUG- -5'
6474 3' -56.8 NC_001847.1 + 72530 0.73 0.454188
Target:  5'- gCGCGcGCGCGUUCGCGGcgAGCggggcgaucgCCGCg -3'
miRNA:   3'- -GCGU-CGCGCAAGCGCUagUCGa---------GGUG- -5'
6474 3' -56.8 NC_001847.1 + 7264 0.73 0.463486
Target:  5'- gCGCGGCGgGggcaCGCGAgacGCUCCGCa -3'
miRNA:   3'- -GCGUCGCgCaa--GCGCUaguCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 99462 0.73 0.472884
Target:  5'- gCGCAGCGCGc-CGCucggggccaaGAUCAGCgcgaUCCGCg -3'
miRNA:   3'- -GCGUCGCGCaaGCG----------CUAGUCG----AGGUG- -5'
6474 3' -56.8 NC_001847.1 + 82132 0.73 0.482376
Target:  5'- gCGCAGCgGCcgcCGCuGUCGGCUCCGCc -3'
miRNA:   3'- -GCGUCG-CGcaaGCGcUAGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 27680 0.72 0.499689
Target:  5'- aCGCGGCGCGUcgggcugaggcgCGCGAgcgcCGGCgggCCGCc -3'
miRNA:   3'- -GCGUCGCGCAa-----------GCGCUa---GUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 130493 0.72 0.499689
Target:  5'- aCGCGGCGCGUcgggcugaggcgCGCGAgcgcCGGCgggCCGCc -3'
miRNA:   3'- -GCGUCGCGCAa-----------GCGCUa---GUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 63314 0.72 0.501629
Target:  5'- aGCAGCGCGUgguucagCGCGG-CGuGCUCCuGCu -3'
miRNA:   3'- gCGUCGCGCAa------GCGCUaGU-CGAGG-UG- -5'
6474 3' -56.8 NC_001847.1 + 14767 0.72 0.501629
Target:  5'- cCGCGGCGUGguaGCGcagCAGCUCgACg -3'
miRNA:   3'- -GCGUCGCGCaagCGCua-GUCGAGgUG- -5'
6474 3' -56.8 NC_001847.1 + 120332 0.72 0.501629
Target:  5'- gCGCAGgGCGc-CGCG--CAGCUCCGCc -3'
miRNA:   3'- -GCGUCgCGCaaGCGCuaGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 46683 0.72 0.511382
Target:  5'- aGCAGCacGCGcgCGCGGUCggGGC-CCGCg -3'
miRNA:   3'- gCGUCG--CGCaaGCGCUAG--UCGaGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.