miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 3' -56.8 NC_001847.1 + 37768 1.09 0.001951
Target:  5'- gCGCAGCGCGUUCGCGAUCAGCUCCACu -3'
miRNA:   3'- -GCGUCGCGCAAGCGCUAGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 28724 0.82 0.138802
Target:  5'- gCGCGGCGCGgcCGCGggCAGCgucgCCGCg -3'
miRNA:   3'- -GCGUCGCGCaaGCGCuaGUCGa---GGUG- -5'
6474 3' -56.8 NC_001847.1 + 45550 0.82 0.142447
Target:  5'- gCGCAGCGCGUUcacCGCGGcggcgUCGcGCUCCACg -3'
miRNA:   3'- -GCGUCGCGCAA---GCGCU-----AGU-CGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 101504 0.82 0.146178
Target:  5'- gCGCGcGCGCGccUCGCGGUCAGCcgCCGCg -3'
miRNA:   3'- -GCGU-CGCGCa-AGCGCUAGUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 73865 0.79 0.213735
Target:  5'- gCGguGCGCGgggCGCG-UCAGUUCCGCc -3'
miRNA:   3'- -GCguCGCGCaa-GCGCuAGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 82635 0.78 0.235812
Target:  5'- gGCcGCGCGgccgCGCGcuccGUCAGCUCCACc -3'
miRNA:   3'- gCGuCGCGCaa--GCGC----UAGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 19337 0.78 0.235812
Target:  5'- cCGCAGCGCaGcgCGCGGagccgcagCGGCUCCGCg -3'
miRNA:   3'- -GCGUCGCG-CaaGCGCUa-------GUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 60748 0.78 0.241622
Target:  5'- gCGCGGCGCGgUgGCGGUuuucCAGCUCCAg -3'
miRNA:   3'- -GCGUCGCGCaAgCGCUA----GUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 73006 0.77 0.289735
Target:  5'- cCGCAGCGCGggCGCGGaaccaggccgcggCAGCggCCGCg -3'
miRNA:   3'- -GCGUCGCGCaaGCGCUa------------GUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 91357 0.76 0.306417
Target:  5'- aGUAGCGCGccCGUGcUCGGCUCUACg -3'
miRNA:   3'- gCGUCGCGCaaGCGCuAGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 99286 0.76 0.313581
Target:  5'- cCGCAGCGCGUcgaggUgGCGccUCAGCUCgCGCa -3'
miRNA:   3'- -GCGUCGCGCA-----AgCGCu-AGUCGAG-GUG- -5'
6474 3' -56.8 NC_001847.1 + 92742 0.76 0.335831
Target:  5'- uCGuCAGCGCG--CGCGAacaugCGGCUCCGCg -3'
miRNA:   3'- -GC-GUCGCGCaaGCGCUa----GUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 77075 0.76 0.335831
Target:  5'- uGCGGCGCGcgCGCGcgccaAUCGGCggcCCGCg -3'
miRNA:   3'- gCGUCGCGCaaGCGC-----UAGUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 91662 0.76 0.335831
Target:  5'- gGCGGCGCGgcgggaCGCGAUCGcgcGCUCgGCg -3'
miRNA:   3'- gCGUCGCGCaa----GCGCUAGU---CGAGgUG- -5'
6474 3' -56.8 NC_001847.1 + 120699 0.75 0.3435
Target:  5'- aGCAGCGCGgccgCGCGcUCGGCgCCAa -3'
miRNA:   3'- gCGUCGCGCaa--GCGCuAGUCGaGGUg -5'
6474 3' -56.8 NC_001847.1 + 118378 0.75 0.344274
Target:  5'- uGCGGCGCGgcauucucaucggccUCGCGAUC-GCUCUGCu -3'
miRNA:   3'- gCGUCGCGCa--------------AGCGCUAGuCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 47795 0.75 0.367254
Target:  5'- gGCcucGGCGCc--CGCGAUCGGCUCCAg -3'
miRNA:   3'- gCG---UCGCGcaaGCGCUAGUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 101000 0.75 0.367254
Target:  5'- gCGCAGCGCGcUCGCcg-CGGCggCCACc -3'
miRNA:   3'- -GCGUCGCGCaAGCGcuaGUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 97180 0.75 0.372957
Target:  5'- gGCGGCGCGcUgcguagcggcuugcUCGCGAUCAGCgCCGa -3'
miRNA:   3'- gCGUCGCGC-A--------------AGCGCUAGUCGaGGUg -5'
6474 3' -56.8 NC_001847.1 + 70345 0.75 0.383707
Target:  5'- gGUGGCGCGUUUGCaagUAGCUCCAg -3'
miRNA:   3'- gCGUCGCGCAAGCGcuaGUCGAGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.