miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 3' -56.8 NC_001847.1 + 61947 0.71 0.561208
Target:  5'- gGCGGCGCGgcccgCGCGggCcGaCUCCGCc -3'
miRNA:   3'- gCGUCGCGCaa---GCGCuaGuC-GAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 7264 0.73 0.463486
Target:  5'- gCGCGGCGgGggcaCGCGAgacGCUCCGCa -3'
miRNA:   3'- -GCGUCGCgCaa--GCGCUaguCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 99462 0.73 0.472884
Target:  5'- gCGCAGCGCGc-CGCucggggccaaGAUCAGCgcgaUCCGCg -3'
miRNA:   3'- -GCGUCGCGCaaGCG----------CUAGUCG----AGGUG- -5'
6474 3' -56.8 NC_001847.1 + 130493 0.72 0.499689
Target:  5'- aCGCGGCGCGUcgggcugaggcgCGCGAgcgcCGGCgggCCGCc -3'
miRNA:   3'- -GCGUCGCGCAa-----------GCGCUa---GUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 30476 0.72 0.531116
Target:  5'- uGCAGCGCuGggaCGCGAUCGGCgCgGCc -3'
miRNA:   3'- gCGUCGCG-Caa-GCGCUAGUCGaGgUG- -5'
6474 3' -56.8 NC_001847.1 + 47865 0.72 0.531116
Target:  5'- uGCuGCGCGggCGCGcgCAGCgcgCgCGCg -3'
miRNA:   3'- gCGuCGCGCaaGCGCuaGUCGa--G-GUG- -5'
6474 3' -56.8 NC_001847.1 + 30532 0.72 0.541087
Target:  5'- gGCgAGCGCGacgUCGcCGAgcucgucgcgCGGCUCCGCg -3'
miRNA:   3'- gCG-UCGCGCa--AGC-GCUa---------GUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 50073 0.72 0.541087
Target:  5'- gCGCGGCGCGgacccgggCGCGGccaaGGCUgCCGCg -3'
miRNA:   3'- -GCGUCGCGCaa------GCGCUag--UCGA-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 132139 0.72 0.541087
Target:  5'- cCGCGaCGCGguggagCGCGcgCGGCUCCAg -3'
miRNA:   3'- -GCGUcGCGCaa----GCGCuaGUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 115783 0.74 0.409285
Target:  5'- gGcCAGaGCGUUCGCGGagccgcugCGGCUCCGCg -3'
miRNA:   3'- gC-GUCgCGCAAGCGCUa-------GUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 130765 0.74 0.392115
Target:  5'- cCGCGGCGCGcgcgcUCGCGGUCgcgguggaGGCggCCGCg -3'
miRNA:   3'- -GCGUCGCGCa----AGCGCUAG--------UCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 32765 0.74 0.392115
Target:  5'- gGCGGCGC-UUCGCGA-CGGCcggCCGCu -3'
miRNA:   3'- gCGUCGCGcAAGCGCUaGUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 45550 0.82 0.142447
Target:  5'- gCGCAGCGCGUUcacCGCGGcggcgUCGcGCUCCACg -3'
miRNA:   3'- -GCGUCGCGCAA---GCGCU-----AGU-CGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 73865 0.79 0.213735
Target:  5'- gCGguGCGCGgggCGCG-UCAGUUCCGCc -3'
miRNA:   3'- -GCguCGCGCaa-GCGCuAGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 60748 0.78 0.241622
Target:  5'- gCGCGGCGCGgUgGCGGUuuucCAGCUCCAg -3'
miRNA:   3'- -GCGUCGCGCaAgCGCUA----GUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 91357 0.76 0.306417
Target:  5'- aGUAGCGCGccCGUGcUCGGCUCUACg -3'
miRNA:   3'- gCGUCGCGCaaGCGCuAGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 77075 0.76 0.335831
Target:  5'- uGCGGCGCGcgCGCGcgccaAUCGGCggcCCGCg -3'
miRNA:   3'- gCGUCGCGCaaGCGC-----UAGUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 118378 0.75 0.344274
Target:  5'- uGCGGCGCGgcauucucaucggccUCGCGAUC-GCUCUGCu -3'
miRNA:   3'- gCGUCGCGCa--------------AGCGCUAGuCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 47795 0.75 0.367254
Target:  5'- gGCcucGGCGCc--CGCGAUCGGCUCCAg -3'
miRNA:   3'- gCG---UCGCGcaaGCGCUAGUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 101106 0.75 0.383707
Target:  5'- gGCgGGCGCGUUCGCcGUCAGgUCUAUc -3'
miRNA:   3'- gCG-UCGCGCAAGCGcUAGUCgAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.