miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 3' -56.8 NC_001847.1 + 9735 0.66 0.843469
Target:  5'- gGCGGCGcCGgggcagUCGCcGUCGG-UCCACc -3'
miRNA:   3'- gCGUCGC-GCa-----AGCGcUAGUCgAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 88909 0.66 0.843469
Target:  5'- gGCGGCucccuuGCG--CGCGcgCGGCUCUGCg -3'
miRNA:   3'- gCGUCG------CGCaaGCGCuaGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 132268 0.66 0.843469
Target:  5'- gCGCGGCGCGgcggccCGCGcGUCGGC-CUg- -3'
miRNA:   3'- -GCGUCGCGCaa----GCGC-UAGUCGaGGug -5'
6474 3' -56.8 NC_001847.1 + 133526 0.66 0.826843
Target:  5'- cCGCGGUGCugcCGCGGcgCAGUgcgCCGCg -3'
miRNA:   3'- -GCGUCGCGcaaGCGCUa-GUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 12811 0.66 0.826843
Target:  5'- -uCAGCGCGUggcgCGCGAgCGGCg-CGCu -3'
miRNA:   3'- gcGUCGCGCAa---GCGCUaGUCGagGUG- -5'
6474 3' -56.8 NC_001847.1 + 81865 0.66 0.826843
Target:  5'- aGC-GCGCGUUCGuCGGacUCGGC-CgCGCg -3'
miRNA:   3'- gCGuCGCGCAAGC-GCU--AGUCGaG-GUG- -5'
6474 3' -56.8 NC_001847.1 + 132181 0.66 0.83525
Target:  5'- gGCGGCGCuGcgCGcCGAggCGGCcgCCGCg -3'
miRNA:   3'- gCGUCGCG-CaaGC-GCUa-GUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 1944 0.66 0.84428
Target:  5'- gCGCGGCGCagagcuccuccaGCGAgggCAGC-CCGCg -3'
miRNA:   3'- -GCGUCGCGcaag--------CGCUa--GUCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 4578 0.66 0.851494
Target:  5'- aGUGGUGCGggUCGCGGUgcgCGGCgacgaaggcggCCACg -3'
miRNA:   3'- gCGUCGCGCa-AGCGCUA---GUCGa----------GGUG- -5'
6474 3' -56.8 NC_001847.1 + 105705 0.66 0.826843
Target:  5'- gCGCcGCGCGUcgaguaccgCGCGAgCGGggCCACg -3'
miRNA:   3'- -GCGuCGCGCAa--------GCGCUaGUCgaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 68611 0.66 0.825993
Target:  5'- -aCGGCGCGgUCGCugcgcccccagccGcgCAGCUCCAg -3'
miRNA:   3'- gcGUCGCGCaAGCG-------------CuaGUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 92661 0.66 0.826843
Target:  5'- cCGCAGCGC-UUCgGCGcgCcGCcCCACc -3'
miRNA:   3'- -GCGUCGCGcAAG-CGCuaGuCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 91742 0.66 0.824286
Target:  5'- uGCAGCGCccugCGCGcgucggccgugaagAUCgcagcgAGCUCCGCg -3'
miRNA:   3'- gCGUCGCGcaa-GCGC--------------UAG------UCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 63275 0.66 0.83525
Target:  5'- gGCcGCGCGcUCGCGG-CcGCUuCCACc -3'
miRNA:   3'- gCGuCGCGCaAGCGCUaGuCGA-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 106033 0.66 0.83525
Target:  5'- gCGCAGC-CGcUCGCGcgCcGC-CCGCg -3'
miRNA:   3'- -GCGUCGcGCaAGCGCuaGuCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 92597 0.66 0.825993
Target:  5'- aCGCGGcCGCGUccUCGCccucaccGAgCAGCuuuUCCACg -3'
miRNA:   3'- -GCGUC-GCGCA--AGCG-------CUaGUCG---AGGUG- -5'
6474 3' -56.8 NC_001847.1 + 78705 0.66 0.83525
Target:  5'- gGCAGCacGCGagUGCGggCGGUcuUCCGCg -3'
miRNA:   3'- gCGUCG--CGCaaGCGCuaGUCG--AGGUG- -5'
6474 3' -56.8 NC_001847.1 + 94243 0.66 0.83525
Target:  5'- gCGCGGCGcCGUggagcggcUCGCGccCuGCgUCCACg -3'
miRNA:   3'- -GCGUCGC-GCA--------AGCGCuaGuCG-AGGUG- -5'
6474 3' -56.8 NC_001847.1 + 17282 0.66 0.843469
Target:  5'- uGCAgGCGCGUggagCGCGGcggguaguacUCGGCggCGCg -3'
miRNA:   3'- gCGU-CGCGCAa---GCGCU----------AGUCGagGUG- -5'
6474 3' -56.8 NC_001847.1 + 22751 0.66 0.848308
Target:  5'- gCGCGGCGCGcaaccaaauaaacUCGCGcUCAauuuccacGCUUCGCg -3'
miRNA:   3'- -GCGUCGCGCa------------AGCGCuAGU--------CGAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.