miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 3' -56.8 NC_001847.1 + 1096 0.67 0.772936
Target:  5'- gGCGcCGCGgcCGCGggCGGCgccgCCGCg -3'
miRNA:   3'- gCGUcGCGCaaGCGCuaGUCGa---GGUG- -5'
6474 3' -56.8 NC_001847.1 + 1141 0.7 0.601996
Target:  5'- gGCGGCGCc-UCgGCGcgCGGCUCCGg -3'
miRNA:   3'- gCGUCGCGcaAG-CGCuaGUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 1165 0.68 0.753854
Target:  5'- gGCAGCGCGgcCGCGcagaaGGCcaccgCCGCg -3'
miRNA:   3'- gCGUCGCGCaaGCGCuag--UCGa----GGUG- -5'
6474 3' -56.8 NC_001847.1 + 1513 0.66 0.866934
Target:  5'- aGCcGCGCGUagGCGGccUCGGCg-CGCg -3'
miRNA:   3'- gCGuCGCGCAagCGCU--AGUCGagGUG- -5'
6474 3' -56.8 NC_001847.1 + 1611 0.68 0.753854
Target:  5'- gCGCGGCGCacugcgcCGCGG-CAGCaCCGCg -3'
miRNA:   3'- -GCGUCGCGcaa----GCGCUaGUCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 1904 0.67 0.780431
Target:  5'- cCGCgAGCGCGUgcgagagcccgcCGCGGcgCGGCggCCACu -3'
miRNA:   3'- -GCG-UCGCGCAa-----------GCGCUa-GUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 1944 0.66 0.84428
Target:  5'- gCGCGGCGCagagcuccuccaGCGAgggCAGC-CCGCg -3'
miRNA:   3'- -GCGUCGCGcaag--------CGCUa--GUCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 2092 0.67 0.800583
Target:  5'- cCGCGGgGCccgCGCGG-CGGCgggCCGCg -3'
miRNA:   3'- -GCGUCgCGcaaGCGCUaGUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 2655 0.7 0.622553
Target:  5'- uGCGGCGCcUUCGCccggCGGCUCgGCc -3'
miRNA:   3'- gCGUCGCGcAAGCGcua-GUCGAGgUG- -5'
6474 3' -56.8 NC_001847.1 + 2892 0.66 0.826843
Target:  5'- gCGCcGCGCGUcgaguaccgCGCGAgCGGggCCACg -3'
miRNA:   3'- -GCGuCGCGCAa--------GCGCUaGUCgaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 3075 0.66 0.866934
Target:  5'- cCGcCAGCGCGUcCgGCGcgCAGg-CCGCg -3'
miRNA:   3'- -GC-GUCGCGCAaG-CGCuaGUCgaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 3220 0.66 0.83525
Target:  5'- gCGCAGC-CGcUCGCGcgCcGC-CCGCg -3'
miRNA:   3'- -GCGUCGcGCaAGCGCuaGuCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 3776 0.69 0.714462
Target:  5'- aGCAGCcCGggCGgGAUguGCUgCACg -3'
miRNA:   3'- gCGUCGcGCaaGCgCUAguCGAgGUG- -5'
6474 3' -56.8 NC_001847.1 + 3875 0.67 0.818258
Target:  5'- aGCGGCgGCGgcccgUCGCG--CGGCgCCGCg -3'
miRNA:   3'- gCGUCG-CGCa----AGCGCuaGUCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 4578 0.66 0.851494
Target:  5'- aGUGGUGCGggUCGCGGUgcgCGGCgacgaaggcggCCACg -3'
miRNA:   3'- gCGUCGCGCa-AGCGCUA---GUCGa----------GGUG- -5'
6474 3' -56.8 NC_001847.1 + 5358 0.68 0.72444
Target:  5'- gCGCGGCGCGgcCGgGcccaGGCUCCGg -3'
miRNA:   3'- -GCGUCGCGCaaGCgCuag-UCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 5425 0.69 0.673932
Target:  5'- aGgAGCGCGguuagcCGCGcGUCucGCUCCACa -3'
miRNA:   3'- gCgUCGCGCaa----GCGC-UAGu-CGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 5532 0.66 0.866182
Target:  5'- gGCGGCGaCGcUCGUGAcggCGGCccagucgucgccgUCCGCg -3'
miRNA:   3'- gCGUCGC-GCaAGCGCUa--GUCG-------------AGGUG- -5'
6474 3' -56.8 NC_001847.1 + 5662 0.69 0.704413
Target:  5'- aGCGgauGCGCGccgUCGCGcgCGGCggcggCCGCc -3'
miRNA:   3'- gCGU---CGCGCa--AGCGCuaGUCGa----GGUG- -5'
6474 3' -56.8 NC_001847.1 + 5960 0.67 0.772936
Target:  5'- aCGUAcGCGCGcgCGCGuaagccUCGGCUuuGCg -3'
miRNA:   3'- -GCGU-CGCGCaaGCGCu-----AGUCGAggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.