miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6475 3' -52.7 NC_001847.1 + 33573 0.66 0.962465
Target:  5'- gGGGGCGUCUgGCGCggcccgggcucggcgGCC-UGCGGAAa -3'
miRNA:   3'- gUCUUGUAGA-UGCGa--------------CGGcACGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 82485 0.66 0.962103
Target:  5'- uGGGACGagccCGCgGCCGUGCGGGc -3'
miRNA:   3'- gUCUUGUagauGCGaCGGCACGUCUu -5'
6475 3' -52.7 NC_001847.1 + 124547 0.66 0.962103
Target:  5'- ---cGCGUCUGCGuCUGCCGagaGCAGc- -3'
miRNA:   3'- gucuUGUAGAUGC-GACGGCa--CGUCuu -5'
6475 3' -52.7 NC_001847.1 + 28880 0.66 0.962103
Target:  5'- gCAGAACGcgCUguggGCGCUGCCGcacgugGCGGc- -3'
miRNA:   3'- -GUCUUGUa-GA----UGCGACGGCa-----CGUCuu -5'
6475 3' -52.7 NC_001847.1 + 131693 0.66 0.962103
Target:  5'- gCAGAACGcgCUguggGCGCUGCCGcacgugGCGGc- -3'
miRNA:   3'- -GUCUUGUa-GA----UGCGACGGCa-----CGUCuu -5'
6475 3' -52.7 NC_001847.1 + 100235 0.66 0.958351
Target:  5'- gCGGGACAUCgaucuuCGCguucucggGCgCGUGCGGGu -3'
miRNA:   3'- -GUCUUGUAGau----GCGa-------CG-GCACGUCUu -5'
6475 3' -52.7 NC_001847.1 + 102056 0.66 0.958351
Target:  5'- -cGAGCGcuguaCUGCGC-GCCGcGCAGAAa -3'
miRNA:   3'- guCUUGUa----GAUGCGaCGGCaCGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 37330 0.66 0.958351
Target:  5'- -cGAGCA-CaGCGCUGgCGUGCGGu- -3'
miRNA:   3'- guCUUGUaGaUGCGACgGCACGUCuu -5'
6475 3' -52.7 NC_001847.1 + 97420 0.66 0.958351
Target:  5'- aGGAACAUCUGCaggcucuuGUUGCUGcGCAGc- -3'
miRNA:   3'- gUCUUGUAGAUG--------CGACGGCaCGUCuu -5'
6475 3' -52.7 NC_001847.1 + 975 0.66 0.954352
Target:  5'- -cGGGCGUCUAUGC-GCCGgcccGCAGc- -3'
miRNA:   3'- guCUUGUAGAUGCGaCGGCa---CGUCuu -5'
6475 3' -52.7 NC_001847.1 + 41722 0.66 0.950102
Target:  5'- cCAGGGCGUgUACaGC-GCCGUGCGc-- -3'
miRNA:   3'- -GUCUUGUAgAUG-CGaCGGCACGUcuu -5'
6475 3' -52.7 NC_001847.1 + 48199 0.66 0.945595
Target:  5'- uCGGGGCG-CgcgGCGCUGCUGUcgaaguacacGCAGAGc -3'
miRNA:   3'- -GUCUUGUaGa--UGCGACGGCA----------CGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 11335 0.66 0.945595
Target:  5'- cCAGGACGgcgcCUGcCGCUGCCGccgccgcGCAGGc -3'
miRNA:   3'- -GUCUUGUa---GAU-GCGACGGCa------CGUCUu -5'
6475 3' -52.7 NC_001847.1 + 29033 0.66 0.940829
Target:  5'- cCAGAGCcgC-GCGC-GCCG-GCAGAc -3'
miRNA:   3'- -GUCUUGuaGaUGCGaCGGCaCGUCUu -5'
6475 3' -52.7 NC_001847.1 + 108229 0.66 0.940829
Target:  5'- cUAGAccGCuUCUACGcCUGCC-UGCAGGc -3'
miRNA:   3'- -GUCU--UGuAGAUGC-GACGGcACGUCUu -5'
6475 3' -52.7 NC_001847.1 + 128322 0.66 0.940829
Target:  5'- gAGGACGUCaccuuUGCGCUGCac-GCGGAc -3'
miRNA:   3'- gUCUUGUAG-----AUGCGACGgcaCGUCUu -5'
6475 3' -52.7 NC_001847.1 + 50520 0.67 0.931052
Target:  5'- cCAGGAguUCgcgcuggaccaccugGCGCUGgCGUGCGGGu -3'
miRNA:   3'- -GUCUUguAGa--------------UGCGACgGCACGUCUu -5'
6475 3' -52.7 NC_001847.1 + 96345 0.67 0.93051
Target:  5'- gCGGGcugGCGUgCgacGCGCUGCCG-GCAGGGa -3'
miRNA:   3'- -GUCU---UGUA-Ga--UGCGACGGCaCGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 14667 0.67 0.93051
Target:  5'- -uGAACAUCgacgGCGCgGCCG-GCGGc- -3'
miRNA:   3'- guCUUGUAGa---UGCGaCGGCaCGUCuu -5'
6475 3' -52.7 NC_001847.1 + 94081 0.67 0.924955
Target:  5'- gCGGGACu----UGCUGcCCGUGCAGAu -3'
miRNA:   3'- -GUCUUGuagauGCGAC-GGCACGUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.