miRNA display CGI


Results 21 - 40 of 807 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6475 5' -63.4 NC_001847.1 + 119093 0.78 0.0988
Target:  5'- aGGCgCCGCGGCCGcCGCGgGGCgGCg -3'
miRNA:   3'- -UCGaGGCGCCGGCaGCGUgCCGaCGg -5'
6475 5' -63.4 NC_001847.1 + 15556 0.78 0.103921
Target:  5'- cGCg-CGCGGCCGUCGggcCGCGGCcGCCg -3'
miRNA:   3'- uCGagGCGCCGGCAGC---GUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 69690 0.78 0.104183
Target:  5'- gGGCg-CGgGGCCGgcgcucgguccgcggCGCGCGGCUGCCg -3'
miRNA:   3'- -UCGagGCgCCGGCa--------------GCGUGCCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 39375 0.78 0.106574
Target:  5'- cAGCUCCGCGacGCCGUCGgGgagcCGGCgccgGCCg -3'
miRNA:   3'- -UCGAGGCGC--CGGCAGCgU----GCCGa---CGG- -5'
6475 5' -63.4 NC_001847.1 + 41349 0.78 0.106574
Target:  5'- cGGCcgCCGCGGCCG-CGCggaaccagccaaGCGGCgGCCg -3'
miRNA:   3'- -UCGa-GGCGCCGGCaGCG------------UGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 37678 0.78 0.106574
Target:  5'- gGGCUUagcgCGCGGCCcUgGCGCGGCUGCg -3'
miRNA:   3'- -UCGAG----GCGCCGGcAgCGUGCCGACGg -5'
6475 5' -63.4 NC_001847.1 + 101257 0.77 0.112071
Target:  5'- cGC-CCGCGGCCa-CGCGCGGCggcGCCu -3'
miRNA:   3'- uCGaGGCGCCGGcaGCGUGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 133385 0.77 0.113202
Target:  5'- uGGCcuUCCGCGGCgCGguggaguaccucugCGCGCGGCUGgCCg -3'
miRNA:   3'- -UCG--AGGCGCCG-GCa-------------GCGUGCCGAC-GG- -5'
6475 5' -63.4 NC_001847.1 + 30572 0.77 0.113202
Target:  5'- uGGCcuUCCGCGGCgCGguggaguaccucugCGCGCGGCUGgCCg -3'
miRNA:   3'- -UCG--AGGCGCCG-GCa-------------GCGUGCCGAC-GG- -5'
6475 5' -63.4 NC_001847.1 + 101042 0.77 0.114919
Target:  5'- aGGCUCCGCcGCCG-CGCgagccACGGCgGCCg -3'
miRNA:   3'- -UCGAGGCGcCGGCaGCG-----UGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 120978 0.77 0.117833
Target:  5'- cGCguaagCGCGGCCGUCGCccuaGCGGCcGCCc -3'
miRNA:   3'- uCGag---GCGCCGGCAGCG----UGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 10039 0.77 0.120817
Target:  5'- cGGCUCCGCguucgucacGGCCGacaCGCGCGcGCUGCg -3'
miRNA:   3'- -UCGAGGCG---------CCGGCa--GCGUGC-CGACGg -5'
6475 5' -63.4 NC_001847.1 + 112852 0.77 0.120817
Target:  5'- cGGCUCCGCguucgucacGGCCGacaCGCGCGcGCUGCg -3'
miRNA:   3'- -UCGAGGCG---------CCGGCa--GCGUGC-CGACGg -5'
6475 5' -63.4 NC_001847.1 + 31931 0.77 0.123871
Target:  5'- cGGCUCCGCGGCgGguaagCGgACGaGCcUGCCg -3'
miRNA:   3'- -UCGAGGCGCCGgCa----GCgUGC-CG-ACGG- -5'
6475 5' -63.4 NC_001847.1 + 38054 0.77 0.123871
Target:  5'- cGCgccgCCGCGGCUaagcugCGCGCGGCgGCCg -3'
miRNA:   3'- uCGa---GGCGCCGGca----GCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 103410 0.76 0.126996
Target:  5'- uGGCccUCCGCGGCCGcucCGCAgCGGCgcgcgGCCc -3'
miRNA:   3'- -UCG--AGGCGCCGGCa--GCGU-GCCGa----CGG- -5'
6475 5' -63.4 NC_001847.1 + 597 0.76 0.126996
Target:  5'- uGGCccUCCGCGGCCGcucCGCAgCGGCgcgcgGCCc -3'
miRNA:   3'- -UCG--AGGCGCCGGCa--GCGU-GCCGa----CGG- -5'
6475 5' -63.4 NC_001847.1 + 131422 0.76 0.136814
Target:  5'- uGCgcgCCGUGGCCGgcgCGCGCGaUUGCCg -3'
miRNA:   3'- uCGa--GGCGCCGGCa--GCGUGCcGACGG- -5'
6475 5' -63.4 NC_001847.1 + 89287 0.76 0.136814
Target:  5'- cGCgcgCCGCGGCCGagGCcuCGGCcgUGCCg -3'
miRNA:   3'- uCGa--GGCGCCGGCagCGu-GCCG--ACGG- -5'
6475 5' -63.4 NC_001847.1 + 33787 0.76 0.136814
Target:  5'- gGGCUUCGCggGGCUG-CGCGCGGC-GCCc -3'
miRNA:   3'- -UCGAGGCG--CCGGCaGCGUGCCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.