miRNA display CGI


Results 1 - 20 of 807 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6475 5' -63.4 NC_001847.1 + 36946 1.1 0.000452
Target:  5'- gAGCUCCGCGGCCGUCGCACGGCUGCCu -3'
miRNA:   3'- -UCGAGGCGCCGGCAGCGUGCCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 106671 0.83 0.046877
Target:  5'- cGGCgUCCGCGGCgCGUCGUgccACGGCgGCCa -3'
miRNA:   3'- -UCG-AGGCGCCG-GCAGCG---UGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 3712 0.82 0.05068
Target:  5'- gGGCcCCGCGGCCGccgcguagCGCGCGGCcGCCu -3'
miRNA:   3'- -UCGaGGCGCCGGCa-------GCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 106525 0.82 0.05068
Target:  5'- gGGCcCCGCGGCCGccgcguagCGCGCGGCcGCCu -3'
miRNA:   3'- -UCGaGGCGCCGGCa-------GCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 106687 0.81 0.057696
Target:  5'- cAGCggCgGCGGcCCGUCGCGCGGC-GCCg -3'
miRNA:   3'- -UCGa-GgCGCC-GGCAGCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 3874 0.81 0.057696
Target:  5'- cAGCggCgGCGGcCCGUCGCGCGGC-GCCg -3'
miRNA:   3'- -UCGa-GgCGCC-GGCAGCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 99147 0.81 0.062347
Target:  5'- cGC-CCGCGGCCGccugcaGCGCGGCUGCg -3'
miRNA:   3'- uCGaGGCGCCGGCag----CGUGCCGACGg -5'
6475 5' -63.4 NC_001847.1 + 34775 0.81 0.062347
Target:  5'- uGCgcgCCGCGGCCGcggCGCGCGGCUacgacccgcgGCCg -3'
miRNA:   3'- uCGa--GGCGCCGGCa--GCGUGCCGA----------CGG- -5'
6475 5' -63.4 NC_001847.1 + 1095 0.8 0.069116
Target:  5'- gGGCgCCGCGGCCG-CGgGCGGCgccGCCg -3'
miRNA:   3'- -UCGaGGCGCCGGCaGCgUGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 103908 0.8 0.069116
Target:  5'- gGGCgCCGCGGCCG-CGgGCGGCgccGCCg -3'
miRNA:   3'- -UCGaGGCGCCGGCaGCgUGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 46936 0.8 0.072761
Target:  5'- gGGCUCCG-GGCCG-CGUGCGGCgaaGCCa -3'
miRNA:   3'- -UCGAGGCgCCGGCaGCGUGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 65263 0.8 0.072761
Target:  5'- gGGC-CCGCGGCCGgucCGCAgCGGCggGCCu -3'
miRNA:   3'- -UCGaGGCGCCGGCa--GCGU-GCCGa-CGG- -5'
6475 5' -63.4 NC_001847.1 + 59372 0.79 0.084617
Target:  5'- gAGC-CCGCGGCCGUguucaccCGCGCGGCggGCg -3'
miRNA:   3'- -UCGaGGCGCCGGCA-------GCGUGCCGa-CGg -5'
6475 5' -63.4 NC_001847.1 + 102844 0.79 0.084833
Target:  5'- cGUUCCGCGGCggCGUCGCGgGGCcgcGCCa -3'
miRNA:   3'- uCGAGGCGCCG--GCAGCGUgCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 52689 0.79 0.087023
Target:  5'- cGCcgCaCGCGGCCGUgCGCGgGGUUGCCg -3'
miRNA:   3'- uCGa-G-GCGCCGGCA-GCGUgCCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 13144 0.79 0.091565
Target:  5'- cGCcugCCGCGGCCGgcgGUugGGCUGCUg -3'
miRNA:   3'- uCGa--GGCGCCGGCag-CGugCCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 77567 0.79 0.091565
Target:  5'- cGCuuUCCGCGGCCGcgcgggccgagcUCGCACGGCgGCa -3'
miRNA:   3'- uCG--AGGCGCCGGC------------AGCGUGCCGaCGg -5'
6475 5' -63.4 NC_001847.1 + 105635 0.78 0.093919
Target:  5'- gAGCUCUGCGGCCGaagCGCcgcccGCGGCcggagagcgUGCCg -3'
miRNA:   3'- -UCGAGGCGCCGGCa--GCG-----UGCCG---------ACGG- -5'
6475 5' -63.4 NC_001847.1 + 79375 0.78 0.09633
Target:  5'- aAGCUgUGCGGCag-CGCGCGGCUcGCCg -3'
miRNA:   3'- -UCGAgGCGCCGgcaGCGUGCCGA-CGG- -5'
6475 5' -63.4 NC_001847.1 + 119153 0.78 0.0988
Target:  5'- cGGCgCCGCGGCCGcCGCGgGGCgGCg -3'
miRNA:   3'- -UCGaGGCGCCGGCaGCGUgCCGaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.