miRNA display CGI


Results 1 - 20 of 807 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6475 5' -63.4 NC_001847.1 + 23825 0.66 0.526796
Target:  5'- uGCU-CGCGGUCcagcgcgCGCACGGCcccgaGCCg -3'
miRNA:   3'- uCGAgGCGCCGGca-----GCGUGCCGa----CGG- -5'
6475 5' -63.4 NC_001847.1 + 5211 0.66 0.526796
Target:  5'- aAGCgcgCCGCGacggaaGCUG-CGCAUGGCU-CCg -3'
miRNA:   3'- -UCGa--GGCGC------CGGCaGCGUGCCGAcGG- -5'
6475 5' -63.4 NC_001847.1 + 28465 0.66 0.526796
Target:  5'- uGGCcgCCGUGGCaCGaCGCgccgcggacgccGCGGCgccGCCg -3'
miRNA:   3'- -UCGa-GGCGCCG-GCaGCG------------UGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 133890 0.66 0.536267
Target:  5'- gGGCUCgGCGcGCCGcUGCGgcCGGUguaccugGCCu -3'
miRNA:   3'- -UCGAGgCGC-CGGCaGCGU--GCCGa------CGG- -5'
6475 5' -63.4 NC_001847.1 + 69283 0.66 0.525853
Target:  5'- gGGCUUccucuaCGCGGgCGU-GCGggcggacCGGCUGCCu -3'
miRNA:   3'- -UCGAG------GCGCCgGCAgCGU-------GCCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 21345 0.66 0.536267
Target:  5'- uGGCgcagacgaUGCGcGCCGUCG-GCGGCUcggGCCg -3'
miRNA:   3'- -UCGag------GCGC-CGGCAGCgUGCCGA---CGG- -5'
6475 5' -63.4 NC_001847.1 + 69023 0.66 0.536267
Target:  5'- gAGCUgCUGCGGUgCGUCGC---GCUGUCg -3'
miRNA:   3'- -UCGA-GGCGCCG-GCAGCGugcCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 20684 0.66 0.535317
Target:  5'- cAGC-UgGCGGCCGauaagcgaggcgcUCGCGauugGGUUGCCg -3'
miRNA:   3'- -UCGaGgCGCCGGC-------------AGCGUg---CCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 50099 0.66 0.524909
Target:  5'- aGGCUgCCGC-GCCGggcggcguagagCGC-CGGCUGgCCu -3'
miRNA:   3'- -UCGA-GGCGcCGGCa-----------GCGuGCCGAC-GG- -5'
6475 5' -63.4 NC_001847.1 + 133678 0.66 0.526796
Target:  5'- cGGCUcugCCGCGGCggcaaCGUgCGCuacACGGUgGCCa -3'
miRNA:   3'- -UCGA---GGCGCCG-----GCA-GCG---UGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 130487 0.66 0.526796
Target:  5'- uGCUCgaCGCGGCgCGUCgggcugaggcGCGCGaGC-GCCg -3'
miRNA:   3'- uCGAG--GCGCCG-GCAG----------CGUGC-CGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 35181 0.66 0.52774
Target:  5'- gGGCa-CGCGGCCuucgaggaggagcgCGCGCGGCUgggcGCCc -3'
miRNA:   3'- -UCGagGCGCCGGca------------GCGUGCCGA----CGG- -5'
6475 5' -63.4 NC_001847.1 + 70118 0.66 0.536267
Target:  5'- aGGUUUCGuCGGCCaugCGCAUGcGC-GCCa -3'
miRNA:   3'- -UCGAGGC-GCCGGca-GCGUGC-CGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 68017 0.66 0.523967
Target:  5'- uAGgUCCGCGggaugaGCCGcaccugcacaaagcUCGaCACGGCgGCCu -3'
miRNA:   3'- -UCgAGGCGC------CGGC--------------AGC-GUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 93622 0.66 0.525853
Target:  5'- uGCUCCggccggcGCGGCCG-CGgACGuCUGCa -3'
miRNA:   3'- uCGAGG-------CGCCGGCaGCgUGCcGACGg -5'
6475 5' -63.4 NC_001847.1 + 68586 0.66 0.536267
Target:  5'- gAGUUCCGCGcGCaCGUaguugGCuACGGCgcgGUCg -3'
miRNA:   3'- -UCGAGGCGC-CG-GCAg----CG-UGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 12101 0.66 0.526796
Target:  5'- cGC-CCGCGGCCGUacuuccaGCGGCccCCg -3'
miRNA:   3'- uCGaGGCGCCGGCAgcg----UGCCGacGG- -5'
6475 5' -63.4 NC_001847.1 + 43533 0.66 0.536267
Target:  5'- gGGCUuccUCGCGGCCaa--CACGGC-GCCg -3'
miRNA:   3'- -UCGA---GGCGCCGGcagcGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 107866 0.66 0.52774
Target:  5'- cGGCUCCGacgggacggacggcgGGCCGggagCGgGCGGCagUGCg -3'
miRNA:   3'- -UCGAGGCg--------------CCGGCa---GCgUGCCG--ACGg -5'
6475 5' -63.4 NC_001847.1 + 39855 0.66 0.536267
Target:  5'- aGGCgCCaGCGGCCGcaagcUUGC-CGGC-GCCc -3'
miRNA:   3'- -UCGaGG-CGCCGGC-----AGCGuGCCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.