miRNA display CGI


Results 1 - 20 of 807 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6475 5' -63.4 NC_001847.1 + 597 0.76 0.126996
Target:  5'- uGGCccUCCGCGGCCGcucCGCAgCGGCgcgcgGCCc -3'
miRNA:   3'- -UCG--AGGCGCCGGCa--GCGU-GCCGa----CGG- -5'
6475 5' -63.4 NC_001847.1 + 891 0.71 0.2792
Target:  5'- cGCgCCGgGGCCGcCGCGgccgcCGGCcGCCg -3'
miRNA:   3'- uCGaGGCgCCGGCaGCGU-----GCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 1012 0.71 0.285549
Target:  5'- cGCUCCaccaGGCCGcCGCccGCGGCgcGCCg -3'
miRNA:   3'- uCGAGGcg--CCGGCaGCG--UGCCGa-CGG- -5'
6475 5' -63.4 NC_001847.1 + 1095 0.8 0.069116
Target:  5'- gGGCgCCGCGGCCG-CGgGCGGCgccGCCg -3'
miRNA:   3'- -UCGaGGCGCCGGCaGCgUGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 1158 0.71 0.285549
Target:  5'- cGGCUCCggcagcGCGGCCG-CGCAgaaGGCcaccGCCg -3'
miRNA:   3'- -UCGAGG------CGCCGGCaGCGUg--CCGa---CGG- -5'
6475 5' -63.4 NC_001847.1 + 1201 0.66 0.55346
Target:  5'- uAGCUCCGUGcGCuCGguguucuuuuagCGCGCgGGC-GCCc -3'
miRNA:   3'- -UCGAGGCGC-CG-GCa-----------GCGUG-CCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 1372 0.68 0.410839
Target:  5'- cGC-CCGuCGagcGCCGgcaGCACGcGCUGCCg -3'
miRNA:   3'- uCGaGGC-GC---CGGCag-CGUGC-CGACGG- -5'
6475 5' -63.4 NC_001847.1 + 1472 0.7 0.340441
Target:  5'- uGCcgCCGCGGCagaGcCGCAgCGGCggcGCCu -3'
miRNA:   3'- uCGa-GGCGCCGg--CaGCGU-GCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 1590 0.69 0.386384
Target:  5'- cAGCgcgCCGCucgGGCCaG-CGCGCGGCgcacugcGCCg -3'
miRNA:   3'- -UCGa--GGCG---CCGG-CaGCGUGCCGa------CGG- -5'
6475 5' -63.4 NC_001847.1 + 1663 0.68 0.419201
Target:  5'- uGCccgacggCCG-GGCCGUCGCGCGGCc--- -3'
miRNA:   3'- uCGa------GGCgCCGGCAGCGUGCCGacgg -5'
6475 5' -63.4 NC_001847.1 + 1732 0.66 0.549625
Target:  5'- cGCgCCGCGGCCaGcCGCGCGcagagguacuccaccGC-GCCg -3'
miRNA:   3'- uCGaGGCGCCGG-CaGCGUGC---------------CGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 1899 0.66 0.5525
Target:  5'- cAGCgCCGCGaGCgCGUgCgagagcccgccgcgGCGCGGCgGCCa -3'
miRNA:   3'- -UCGaGGCGC-CG-GCA-G--------------CGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 2085 0.7 0.340441
Target:  5'- gAGCgccCCGCGGggcCCG-CGCgGCGGCggGCCg -3'
miRNA:   3'- -UCGa--GGCGCC---GGCaGCG-UGCCGa-CGG- -5'
6475 5' -63.4 NC_001847.1 + 2181 0.67 0.480476
Target:  5'- gGGUggUCCGCGaGCCG-CGCcgcgaccucgggGCGGCaguagGCCg -3'
miRNA:   3'- -UCG--AGGCGC-CGGCaGCG------------UGCCGa----CGG- -5'
6475 5' -63.4 NC_001847.1 + 2287 0.7 0.340441
Target:  5'- uGCUCCGC-GCCaaaGUCcaagACGGCUGCCc -3'
miRNA:   3'- uCGAGGCGcCGG---CAGcg--UGCCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 2293 0.69 0.386384
Target:  5'- cGGCggCGgGGCCGcCGgGCGGCauggGCCc -3'
miRNA:   3'- -UCGagGCgCCGGCaGCgUGCCGa---CGG- -5'
6475 5' -63.4 NC_001847.1 + 2345 0.66 0.565013
Target:  5'- cGGCUCC-C-GCCG-CGC-CGGCccgGCCg -3'
miRNA:   3'- -UCGAGGcGcCGGCaGCGuGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 2427 0.69 0.40258
Target:  5'- gGGCcccCCGCGGCgGcCgGCAgGGCcGCCg -3'
miRNA:   3'- -UCGa--GGCGCCGgCaG-CGUgCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 2589 0.69 0.370623
Target:  5'- cGGCcgCCGCGGCCG-CaCGCGaGCccGCCg -3'
miRNA:   3'- -UCGa-GGCGCCGGCaGcGUGC-CGa-CGG- -5'
6475 5' -63.4 NC_001847.1 + 2628 0.68 0.427667
Target:  5'- uGCUUCgGCGggaccGCCGUCGCcgcuuGCGGC-GCCu -3'
miRNA:   3'- uCGAGG-CGC-----CGGCAGCG-----UGCCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.