miRNA display CGI


Results 1 - 20 of 807 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6475 5' -63.4 NC_001847.1 + 115808 0.75 0.154736
Target:  5'- cGGCUCCGCGcGCUG-CGCuGCGGCggGCUc -3'
miRNA:   3'- -UCGAGGCGC-CGGCaGCG-UGCCGa-CGG- -5'
6475 5' -63.4 NC_001847.1 + 103410 0.76 0.126996
Target:  5'- uGGCccUCCGCGGCCGcucCGCAgCGGCgcgcgGCCc -3'
miRNA:   3'- -UCG--AGGCGCCGGCa--GCGU-GCCGa----CGG- -5'
6475 5' -63.4 NC_001847.1 + 33787 0.76 0.136814
Target:  5'- gGGCUUCGCggGGCUG-CGCGCGGC-GCCc -3'
miRNA:   3'- -UCGAGGCG--CCGGCaGCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 84669 0.76 0.136814
Target:  5'- uAGCgcgCCGCuuGCUGUCGCGCGGCgcucacgugGCCg -3'
miRNA:   3'- -UCGa--GGCGc-CGGCAGCGUGCCGa--------CGG- -5'
6475 5' -63.4 NC_001847.1 + 71206 0.76 0.143742
Target:  5'- uGCUgcccCCGCGGCCG-CGCugGGUgauggagugUGCCa -3'
miRNA:   3'- uCGA----GGCGCCGGCaGCGugCCG---------ACGG- -5'
6475 5' -63.4 NC_001847.1 + 31877 0.76 0.147325
Target:  5'- uGCUgCCgGCGGagcCCGUCGCGCGGaUGCCg -3'
miRNA:   3'- uCGA-GG-CGCC---GGCAGCGUGCCgACGG- -5'
6475 5' -63.4 NC_001847.1 + 82491 0.75 0.150989
Target:  5'- gAGC-CCGCGGCCGU-GCG-GGCgGCCa -3'
miRNA:   3'- -UCGaGGCGCCGGCAgCGUgCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 15028 0.75 0.150989
Target:  5'- cGCgagCCGCGGCCGcCGgGCGaGCUGUg -3'
miRNA:   3'- uCGa--GGCGCCGGCaGCgUGC-CGACGg -5'
6475 5' -63.4 NC_001847.1 + 5661 0.75 0.150989
Target:  5'- cAGCggaUGCGcGCCGUCGCgcGCGGCggcgGCCg -3'
miRNA:   3'- -UCGag-GCGC-CGGCAGCG--UGCCGa---CGG- -5'
6475 5' -63.4 NC_001847.1 + 31931 0.77 0.123871
Target:  5'- cGGCUCCGCGGCgGguaagCGgACGaGCcUGCCg -3'
miRNA:   3'- -UCGAGGCGCCGgCa----GCgUGC-CG-ACGG- -5'
6475 5' -63.4 NC_001847.1 + 112852 0.77 0.120817
Target:  5'- cGGCUCCGCguucgucacGGCCGacaCGCGCGcGCUGCg -3'
miRNA:   3'- -UCGAGGCG---------CCGGCa--GCGUGC-CGACGg -5'
6475 5' -63.4 NC_001847.1 + 133385 0.77 0.113202
Target:  5'- uGGCcuUCCGCGGCgCGguggaguaccucugCGCGCGGCUGgCCg -3'
miRNA:   3'- -UCG--AGGCGCCG-GCa-------------GCGUGCCGAC-GG- -5'
6475 5' -63.4 NC_001847.1 + 106687 0.81 0.057696
Target:  5'- cAGCggCgGCGGcCCGUCGCGCGGC-GCCg -3'
miRNA:   3'- -UCGa-GgCGCC-GGCAGCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 34775 0.81 0.062347
Target:  5'- uGCgcgCCGCGGCCGcggCGCGCGGCUacgacccgcgGCCg -3'
miRNA:   3'- uCGa--GGCGCCGGCa--GCGUGCCGA----------CGG- -5'
6475 5' -63.4 NC_001847.1 + 103908 0.8 0.069116
Target:  5'- gGGCgCCGCGGCCG-CGgGCGGCgccGCCg -3'
miRNA:   3'- -UCGaGGCGCCGGCaGCgUGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 65263 0.8 0.072761
Target:  5'- gGGC-CCGCGGCCGgucCGCAgCGGCggGCCu -3'
miRNA:   3'- -UCGaGGCGCCGGCa--GCGU-GCCGa-CGG- -5'
6475 5' -63.4 NC_001847.1 + 77567 0.79 0.091565
Target:  5'- cGCuuUCCGCGGCCGcgcgggccgagcUCGCACGGCgGCa -3'
miRNA:   3'- uCG--AGGCGCCGGC------------AGCGUGCCGaCGg -5'
6475 5' -63.4 NC_001847.1 + 13144 0.79 0.091565
Target:  5'- cGCcugCCGCGGCCGgcgGUugGGCUGCUg -3'
miRNA:   3'- uCGa--GGCGCCGGCag-CGugCCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 79375 0.78 0.09633
Target:  5'- aAGCUgUGCGGCag-CGCGCGGCUcGCCg -3'
miRNA:   3'- -UCGAgGCGCCGgcaGCGUGCCGA-CGG- -5'
6475 5' -63.4 NC_001847.1 + 15556 0.78 0.103921
Target:  5'- cGCg-CGCGGCCGUCGggcCGCGGCcGCCg -3'
miRNA:   3'- uCGagGCGCCGGCAGC---GUGCCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.