miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 5' -55.5 NC_001847.1 + 36745 1.1 0.001862
Target:  5'- gAGCAAGUGCUGCCUCCGAAAGCGGACa -3'
miRNA:   3'- -UCGUUCACGACGGAGGCUUUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 42172 0.75 0.38512
Target:  5'- cGGCGGGUGCUggcggaaugcgagGCCUUCGc-AGCGGACc -3'
miRNA:   3'- -UCGUUCACGA-------------CGGAGGCuuUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 67966 0.74 0.421154
Target:  5'- cGGCAGGggGUcGCCgCCGAGAGCGGGg -3'
miRNA:   3'- -UCGUUCa-CGaCGGaGGCUUUCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 70533 0.73 0.486117
Target:  5'- gGGCGGcGUGCUggcgcugGCCgacUCGGAGGCGGACg -3'
miRNA:   3'- -UCGUU-CACGA-------CGGa--GGCUUUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 49311 0.73 0.496916
Target:  5'- uGGC-GGUGCUGCCcCUGGugcGCGGGCu -3'
miRNA:   3'- -UCGuUCACGACGGaGGCUuu-CGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 29185 0.73 0.52084
Target:  5'- cGCGGacGUGCUGCCguugcuggggcugcCCGAcGGCGGGCu -3'
miRNA:   3'- uCGUU--CACGACGGa-------------GGCUuUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 119369 0.72 0.567846
Target:  5'- cGGCGcuUGCcGCCggCGAAAGCGGGCc -3'
miRNA:   3'- -UCGUucACGaCGGagGCUUUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 31338 0.72 0.567846
Target:  5'- gAGCGcGUGCcGCCgCCGgcGGCGGAa -3'
miRNA:   3'- -UCGUuCACGaCGGaGGCuuUCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 134151 0.72 0.567846
Target:  5'- gAGCGcGUGCcGCCgCCGgcGGCGGAa -3'
miRNA:   3'- -UCGUuCACGaCGGaGGCuuUCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 100066 0.71 0.599081
Target:  5'- uAGCGAGgcucGCcGCCUCCcGAGGCGG-Cg -3'
miRNA:   3'- -UCGUUCa---CGaCGGAGGcUUUCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 67193 0.71 0.599081
Target:  5'- cGCAGGUaGCacacGCCgugCCGAGcGGCGGGCg -3'
miRNA:   3'- uCGUUCA-CGa---CGGa--GGCUU-UCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 70730 0.7 0.651542
Target:  5'- cGCGAGgacagccGCUGCCaauagcgCCGcgcAGAGCGGGCg -3'
miRNA:   3'- uCGUUCa------CGACGGa------GGC---UUUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 20699 0.7 0.651542
Target:  5'- cAGaCGAGUGCUacgaggacgagGCC-CCGcuGGCGGACc -3'
miRNA:   3'- -UC-GUUCACGA-----------CGGaGGCuuUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 10108 0.7 0.66202
Target:  5'- cGGCGGGgaaaGCcGCCUUCGcggcGAGCGGGCc -3'
miRNA:   3'- -UCGUUCa---CGaCGGAGGCu---UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 58916 0.7 0.682891
Target:  5'- gGGCGGGUGUUGCgcagCagCGAAGGCaGGACc -3'
miRNA:   3'- -UCGUUCACGACG----GagGCUUUCG-CCUG- -5'
6476 5' -55.5 NC_001847.1 + 25127 0.7 0.682891
Target:  5'- gAGCGGGcggcggccgcgGCUGCCUaaagCCGAA-GCGGAUg -3'
miRNA:   3'- -UCGUUCa----------CGACGGA----GGCUUuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 127940 0.7 0.682891
Target:  5'- gAGCGGGcggcggccgcgGCUGCCUaaagCCGAA-GCGGAUg -3'
miRNA:   3'- -UCGUUCa----------CGACGGA----GGCUUuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 125444 0.7 0.693266
Target:  5'- cGCAGG-GC-GCgUCCGGggaGGGCGGGCu -3'
miRNA:   3'- uCGUUCaCGaCGgAGGCU---UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 130707 0.7 0.693266
Target:  5'- cGCgGAGUGC-GCCgaggCCGAGggGGCGGAg -3'
miRNA:   3'- uCG-UUCACGaCGGa---GGCUU--UCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 27894 0.7 0.693266
Target:  5'- cGCgGAGUGC-GCCgaggCCGAGggGGCGGAg -3'
miRNA:   3'- uCG-UUCACGaCGGa---GGCUU--UCGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.