miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 5' -55.5 NC_001847.1 + 2540 0.69 0.744134
Target:  5'- cGCGGGaccGCUGCuCUCCG---GCGGGCu -3'
miRNA:   3'- uCGUUCa--CGACG-GAGGCuuuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 3949 0.67 0.845262
Target:  5'- cGGCGGGggggGCgccGUCUCCGgcGGCgaGGGCg -3'
miRNA:   3'- -UCGUUCa---CGa--CGGAGGCuuUCG--CCUG- -5'
6476 5' -55.5 NC_001847.1 + 5237 0.66 0.883788
Target:  5'- uGGCuccGUGCagGUCUCCGcgggGGAGgGGGCg -3'
miRNA:   3'- -UCGuu-CACGa-CGGAGGC----UUUCgCCUG- -5'
6476 5' -55.5 NC_001847.1 + 8119 0.7 0.693266
Target:  5'- cGCAGGcGCgggGCC-CCaGGGGCGGGCg -3'
miRNA:   3'- uCGUUCaCGa--CGGaGGcUUUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 9930 0.69 0.754038
Target:  5'- cGGCAGGcgGCUGCCagcgUCUGGGAcuCGGACc -3'
miRNA:   3'- -UCGUUCa-CGACGG----AGGCUUUc-GCCUG- -5'
6476 5' -55.5 NC_001847.1 + 10108 0.7 0.66202
Target:  5'- cGGCGGGgaaaGCcGCCUUCGcggcGAGCGGGCc -3'
miRNA:   3'- -UCGUUCa---CGaCGGAGGCu---UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 10241 0.66 0.861331
Target:  5'- aAGcCGAGUugcGUUGUCUuuGGgauGAGCGGGCg -3'
miRNA:   3'- -UC-GUUCA---CGACGGAggCU---UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 11430 0.66 0.883788
Target:  5'- gAGCgAAGUGCUGCCgugcgaccCCGcgccAGCGG-Cu -3'
miRNA:   3'- -UCG-UUCACGACGGa-------GGCuu--UCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 13087 0.68 0.777327
Target:  5'- cGCGAGUGCgcaacugccauuuuuUGUCgcggCCGggGcgcGCGGGCg -3'
miRNA:   3'- uCGUUCACG---------------ACGGa---GGCuuU---CGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 14858 0.66 0.869043
Target:  5'- cGCGAGcGUUGCgUCgGucGGGUGGACa -3'
miRNA:   3'- uCGUUCaCGACGgAGgCu-UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 14910 0.67 0.852597
Target:  5'- cGCAGGccGaCUGCCUCgccgCGAuacacaaggcugcGAGCGGGCg -3'
miRNA:   3'- uCGUUCa-C-GACGGAG----GCU-------------UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 18861 0.68 0.773497
Target:  5'- cAGCGGGgcacGCUGCCUCgccGAGCGG-Cg -3'
miRNA:   3'- -UCGUUCa---CGACGGAGgcuUUCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 20699 0.7 0.651542
Target:  5'- cAGaCGAGUGCUacgaggacgagGCC-CCGcuGGCGGACc -3'
miRNA:   3'- -UC-GUUCACGA-----------CGGaGGCuuUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 22099 0.66 0.87653
Target:  5'- cGGCAGGcGC-GCCgggggCGAcAGCGGGCg -3'
miRNA:   3'- -UCGUUCaCGaCGGag---GCUuUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 22631 0.7 0.693266
Target:  5'- cGCAGG-GC-GCgUCCGGggaGGGCGGGCu -3'
miRNA:   3'- uCGUUCaCGaCGgAGGCU---UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 25127 0.7 0.682891
Target:  5'- gAGCGGGcggcggccgcgGCUGCCUaaagCCGAA-GCGGAUg -3'
miRNA:   3'- -UCGUUCa----------CGACGGA----GGCUUuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 26501 0.68 0.792423
Target:  5'- uGCAAG-GCggGCCUgCCGGgcGCGGGg -3'
miRNA:   3'- uCGUUCaCGa-CGGA-GGCUuuCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 27280 0.66 0.869043
Target:  5'- uGUGAG-GCUGCCcgCCGGgcGAGaGGACg -3'
miRNA:   3'- uCGUUCaCGACGGa-GGCU--UUCgCCUG- -5'
6476 5' -55.5 NC_001847.1 + 27894 0.7 0.693266
Target:  5'- cGCgGAGUGC-GCCgaggCCGAGggGGCGGAg -3'
miRNA:   3'- uCG-UUCACGaCGGa---GGCUU--UCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 28843 0.67 0.836917
Target:  5'- cGGCGcc-GCUGCCgCCGGucGgGGACg -3'
miRNA:   3'- -UCGUucaCGACGGaGGCUuuCgCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.