Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6476 | 5' | -55.5 | NC_001847.1 | + | 54375 | 0.68 | 0.773497 |
Target: 5'- cGCGAGcUGCUGCggcgggcggCCGcgggcGAGGCGGGCg -3' miRNA: 3'- uCGUUC-ACGACGga-------GGC-----UUUCGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 125444 | 0.7 | 0.693266 |
Target: 5'- cGCAGG-GC-GCgUCCGGggaGGGCGGGCu -3' miRNA: 3'- uCGUUCaCGaCGgAGGCU---UUCGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 45509 | 0.69 | 0.724027 |
Target: 5'- gGGCGGGcGCcGCCgCCGGGcggcGCGGACg -3' miRNA: 3'- -UCGUUCaCGaCGGaGGCUUu---CGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 2540 | 0.69 | 0.744134 |
Target: 5'- cGCGGGaccGCUGCuCUCCG---GCGGGCu -3' miRNA: 3'- uCGUUCa--CGACG-GAGGCuuuCGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 121406 | 0.69 | 0.744134 |
Target: 5'- gGGCAGGaGCUGCg-UgGAGGGCGGAg -3' miRNA: 3'- -UCGUUCaCGACGgaGgCUUUCGCCUg -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 9930 | 0.69 | 0.754038 |
Target: 5'- cGGCAGGcgGCUGCCagcgUCUGGGAcuCGGACc -3' miRNA: 3'- -UCGUUCa-CGACGG----AGGCUUUc-GCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 45817 | 0.68 | 0.763829 |
Target: 5'- cGGCGGGaGCUGCCgcCCGGgccacucgcuGGGCGGcACg -3' miRNA: 3'- -UCGUUCaCGACGGa-GGCU----------UUCGCC-UG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 65165 | 0.68 | 0.767711 |
Target: 5'- cGCGGGaccucCUGCCUCUGGAGuuuauggucgcgcccGCGGACg -3' miRNA: 3'- uCGUUCac---GACGGAGGCUUU---------------CGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 18861 | 0.68 | 0.773497 |
Target: 5'- cAGCGGGgcacGCUGCCUCgccGAGCGG-Cg -3' miRNA: 3'- -UCGUUCa---CGACGGAGgcuUUCGCCuG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 130707 | 0.7 | 0.693266 |
Target: 5'- cGCgGAGUGC-GCCgaggCCGAGggGGCGGAg -3' miRNA: 3'- uCG-UUCACGaCGGa---GGCUU--UCGCCUg -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 8119 | 0.7 | 0.693266 |
Target: 5'- cGCAGGcGCgggGCC-CCaGGGGCGGGCg -3' miRNA: 3'- uCGUUCaCGa--CGGaGGcUUUCGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 50322 | 0.7 | 0.693266 |
Target: 5'- uAGCucaaacucGGUGCUGCacaugaCGGAGGUGGACg -3' miRNA: 3'- -UCGu-------UCACGACGgag---GCUUUCGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 70533 | 0.73 | 0.486117 |
Target: 5'- gGGCGGcGUGCUggcgcugGCCgacUCGGAGGCGGACg -3' miRNA: 3'- -UCGUU-CACGA-------CGGa--GGCUUUCGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 49311 | 0.73 | 0.496916 |
Target: 5'- uGGC-GGUGCUGCCcCUGGugcGCGGGCu -3' miRNA: 3'- -UCGuUCACGACGGaGGCUuu-CGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 29185 | 0.73 | 0.52084 |
Target: 5'- cGCGGacGUGCUGCCguugcuggggcugcCCGAcGGCGGGCu -3' miRNA: 3'- uCGUU--CACGACGGa-------------GGCUuUCGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 134151 | 0.72 | 0.567846 |
Target: 5'- gAGCGcGUGCcGCCgCCGgcGGCGGAa -3' miRNA: 3'- -UCGUuCACGaCGGaGGCuuUCGCCUg -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 67193 | 0.71 | 0.599081 |
Target: 5'- cGCAGGUaGCacacGCCgugCCGAGcGGCGGGCg -3' miRNA: 3'- uCGUUCA-CGa---CGGa--GGCUU-UCGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 10108 | 0.7 | 0.66202 |
Target: 5'- cGGCGGGgaaaGCcGCCUUCGcggcGAGCGGGCc -3' miRNA: 3'- -UCGUUCa---CGaCGGAGGCu---UUCGCCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 58916 | 0.7 | 0.682891 |
Target: 5'- gGGCGGGUGUUGCgcagCagCGAAGGCaGGACc -3' miRNA: 3'- -UCGUUCACGACG----GagGCUUUCG-CCUG- -5' |
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6476 | 5' | -55.5 | NC_001847.1 | + | 127940 | 0.7 | 0.682891 |
Target: 5'- gAGCGGGcggcggccgcgGCUGCCUaaagCCGAA-GCGGAUg -3' miRNA: 3'- -UCGUUCa----------CGACGGA----GGCUUuCGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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