miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 5' -53.5 NC_001847.1 + 36596 1.07 0.004769
Target:  5'- cAGCGCUAGAAGACCAGCGUGCCAUUAc -3'
miRNA:   3'- -UCGCGAUCUUCUGGUCGCACGGUAAU- -5'
6477 5' -53.5 NC_001847.1 + 74387 0.8 0.258848
Target:  5'- aGGCGCUGGggGACCGcGCG-GCCGc-- -3'
miRNA:   3'- -UCGCGAUCuuCUGGU-CGCaCGGUaau -5'
6477 5' -53.5 NC_001847.1 + 117810 0.75 0.462398
Target:  5'- cAGCGCUAGAAGgcGCCGGCuacgcggccguGUGCCGc-- -3'
miRNA:   3'- -UCGCGAUCUUC--UGGUCG-----------CACGGUaau -5'
6477 5' -53.5 NC_001847.1 + 32560 0.75 0.482051
Target:  5'- cGGCGCUGGgcGACCuGGCGgacGCCAa-- -3'
miRNA:   3'- -UCGCGAUCuuCUGG-UCGCa--CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 65900 0.75 0.502101
Target:  5'- cGCGCgUAGuAGGCCAGCGUuGCCGc-- -3'
miRNA:   3'- uCGCG-AUCuUCUGGUCGCA-CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 80355 0.74 0.53283
Target:  5'- cGGCGC-GGAAGGCgCGGCGUGCgCAa-- -3'
miRNA:   3'- -UCGCGaUCUUCUG-GUCGCACG-GUaau -5'
6477 5' -53.5 NC_001847.1 + 32881 0.73 0.596048
Target:  5'- uGGCGCUGGAGGGCaCGGUGcgcGCCGc-- -3'
miRNA:   3'- -UCGCGAUCUUCUG-GUCGCa--CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 29169 0.73 0.603523
Target:  5'- aGGCGCUGGAGGcggcccgccgcgccGCCGGCGccGCCGg-- -3'
miRNA:   3'- -UCGCGAUCUUC--------------UGGUCGCa-CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 131982 0.73 0.603523
Target:  5'- aGGCGCUGGAGGcggcccgccgcgccGCCGGCGccGCCGg-- -3'
miRNA:   3'- -UCGCGAUCUUC--------------UGGUCGCa-CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 35318 0.73 0.606731
Target:  5'- cGCGCUGGAAG-CgGGCGUGCg---- -3'
miRNA:   3'- uCGCGAUCUUCuGgUCGCACGguaau -5'
6477 5' -53.5 NC_001847.1 + 39846 0.73 0.617435
Target:  5'- cGCGcCUGGAGGcGCCAGCG-GCCGc-- -3'
miRNA:   3'- uCGC-GAUCUUC-UGGUCGCaCGGUaau -5'
6477 5' -53.5 NC_001847.1 + 17066 0.72 0.66028
Target:  5'- gGGCGgUAaacGGCCGGCGUGCCAg-- -3'
miRNA:   3'- -UCGCgAUcuuCUGGUCGCACGGUaau -5'
6477 5' -53.5 NC_001847.1 + 47558 0.72 0.670954
Target:  5'- gGGCGCgGGGAGcCCGGCG-GCCGc-- -3'
miRNA:   3'- -UCGCGaUCUUCuGGUCGCaCGGUaau -5'
6477 5' -53.5 NC_001847.1 + 61039 0.71 0.681592
Target:  5'- gGGCGCggccgccccGGGcACCAGCGUGCCAa-- -3'
miRNA:   3'- -UCGCGauc------UUC-UGGUCGCACGGUaau -5'
6477 5' -53.5 NC_001847.1 + 27915 0.71 0.702725
Target:  5'- cGCGCUugcGGAGGCCAGgGcgGCCGUc- -3'
miRNA:   3'- uCGCGAu--CUUCUGGUCgCa-CGGUAau -5'
6477 5' -53.5 NC_001847.1 + 53417 0.71 0.702725
Target:  5'- uGGgGCUGGAGGGC--GCGUGCCGc-- -3'
miRNA:   3'- -UCgCGAUCUUCUGguCGCACGGUaau -5'
6477 5' -53.5 NC_001847.1 + 41586 0.71 0.702725
Target:  5'- cGUGCUuugcgucGAGGCCAGCGUGgCGUUGu -3'
miRNA:   3'- uCGCGAuc-----UUCUGGUCGCACgGUAAU- -5'
6477 5' -53.5 NC_001847.1 + 71221 0.71 0.733908
Target:  5'- cGCGCUGGguGAUgGaGUGUGCCAUg- -3'
miRNA:   3'- uCGCGAUCuuCUGgU-CGCACGGUAau -5'
6477 5' -53.5 NC_001847.1 + 30478 0.7 0.744123
Target:  5'- cAGCGCUGGGAcgcGAUCGGCGcgGCCc--- -3'
miRNA:   3'- -UCGCGAUCUU---CUGGUCGCa-CGGuaau -5'
6477 5' -53.5 NC_001847.1 + 125338 0.7 0.744123
Target:  5'- cGCGCU-GAAcGCCAGCGgccgGCCAg-- -3'
miRNA:   3'- uCGCGAuCUUcUGGUCGCa---CGGUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.