Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6477 | 5' | -53.5 | NC_001847.1 | + | 76537 | 0.69 | 0.829968 |
Target: 5'- gGGCGCgcu--GGCCAGCGUGUUAc-- -3' miRNA: 3'- -UCGCGaucuuCUGGUCGCACGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 71221 | 0.71 | 0.733908 |
Target: 5'- cGCGCUGGguGAUgGaGUGUGCCAUg- -3' miRNA: 3'- uCGCGAUCuuCUGgU-CGCACGGUAau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 30478 | 0.7 | 0.744123 |
Target: 5'- cAGCGCUGGGAcgcGAUCGGCGcgGCCc--- -3' miRNA: 3'- -UCGCGAUCUU---CUGGUCGCa-CGGuaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 47585 | 0.7 | 0.783801 |
Target: 5'- cGCGCcgaGGAAGGCCGGCGgcagGUCGc-- -3' miRNA: 3'- uCGCGa--UCUUCUGGUCGCa---CGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 88599 | 0.69 | 0.793373 |
Target: 5'- cGCgGCUGGAGGACCucgcGCGcGCCGc-- -3' miRNA: 3'- uCG-CGAUCUUCUGGu---CGCaCGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 14035 | 0.69 | 0.802786 |
Target: 5'- aGGCGCUGGucGGCC-GCGaGCCGc-- -3' miRNA: 3'- -UCGCGAUCuuCUGGuCGCaCGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 131503 | 0.69 | 0.818393 |
Target: 5'- cGGCGCUGGuGGACCuGGUGUacgcgcgccgcgacGCCAUg- -3' miRNA: 3'- -UCGCGAUCuUCUGG-UCGCA--------------CGGUAau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 43102 | 0.69 | 0.821093 |
Target: 5'- aGGCGCccGGAGGcGCCGGCgGUGCCc--- -3' miRNA: 3'- -UCGCGa-UCUUC-UGGUCG-CACGGuaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 43601 | 0.69 | 0.829968 |
Target: 5'- uGGCGCUG--GGGCCGGUGcugGCCAc-- -3' miRNA: 3'- -UCGCGAUcuUCUGGUCGCa--CGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 27915 | 0.71 | 0.702725 |
Target: 5'- cGCGCUugcGGAGGCCAGgGcgGCCGUc- -3' miRNA: 3'- uCGCGAu--CUUCUGGUCgCa-CGGUAau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 41586 | 0.71 | 0.702725 |
Target: 5'- cGUGCUuugcgucGAGGCCAGCGUGgCGUUGu -3' miRNA: 3'- uCGCGAuc-----UUCUGGUCGCACgGUAAU- -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 53417 | 0.71 | 0.702725 |
Target: 5'- uGGgGCUGGAGGGC--GCGUGCCGc-- -3' miRNA: 3'- -UCgCGAUCUUCUGguCGCACGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 32560 | 0.75 | 0.482051 |
Target: 5'- cGGCGCUGGgcGACCuGGCGgacGCCAa-- -3' miRNA: 3'- -UCGCGAUCuuCUGG-UCGCa--CGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 32881 | 0.73 | 0.596048 |
Target: 5'- uGGCGCUGGAGGGCaCGGUGcgcGCCGc-- -3' miRNA: 3'- -UCGCGAUCUUCUG-GUCGCa--CGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 131982 | 0.73 | 0.603523 |
Target: 5'- aGGCGCUGGAGGcggcccgccgcgccGCCGGCGccGCCGg-- -3' miRNA: 3'- -UCGCGAUCUUC--------------UGGUCGCa-CGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 35318 | 0.73 | 0.606731 |
Target: 5'- cGCGCUGGAAG-CgGGCGUGCg---- -3' miRNA: 3'- uCGCGAUCUUCuGgUCGCACGguaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 39846 | 0.73 | 0.617435 |
Target: 5'- cGCGcCUGGAGGcGCCAGCG-GCCGc-- -3' miRNA: 3'- uCGC-GAUCUUC-UGGUCGCaCGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 17066 | 0.72 | 0.66028 |
Target: 5'- gGGCGgUAaacGGCCGGCGUGCCAg-- -3' miRNA: 3'- -UCGCgAUcuuCUGGUCGCACGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 47558 | 0.72 | 0.670954 |
Target: 5'- gGGCGCgGGGAGcCCGGCG-GCCGc-- -3' miRNA: 3'- -UCGCGaUCUUCuGGUCGCaCGGUaau -5' |
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6477 | 5' | -53.5 | NC_001847.1 | + | 61039 | 0.71 | 0.681592 |
Target: 5'- gGGCGCggccgccccGGGcACCAGCGUGCCAa-- -3' miRNA: 3'- -UCGCGauc------UUC-UGGUCGCACGGUaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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