miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 5' -53.5 NC_001847.1 + 1176 0.68 0.878793
Target:  5'- cGCGC-AGAAGGCCAccgccGCG-GCCGg-- -3'
miRNA:   3'- uCGCGaUCUUCUGGU-----CGCaCGGUaau -5'
6477 5' -53.5 NC_001847.1 + 2236 0.68 0.878793
Target:  5'- cGGCGCUGGgcG-CgGGCGUGUgGUa- -3'
miRNA:   3'- -UCGCGAUCuuCuGgUCGCACGgUAau -5'
6477 5' -53.5 NC_001847.1 + 13811 0.67 0.900044
Target:  5'- cAGCGgUGuacGggGGCCGGCGUGUgAc-- -3'
miRNA:   3'- -UCGCgAU---CuuCUGGUCGCACGgUaau -5'
6477 5' -53.5 NC_001847.1 + 14035 0.69 0.802786
Target:  5'- aGGCGCUGGucGGCC-GCGaGCCGc-- -3'
miRNA:   3'- -UCGCGAUCuuCUGGuCGCaCGGUaau -5'
6477 5' -53.5 NC_001847.1 + 14118 0.66 0.930348
Target:  5'- uGGCGCcGGAAGcgaGCgGGCGUGUCu--- -3'
miRNA:   3'- -UCGCGaUCUUC---UGgUCGCACGGuaau -5'
6477 5' -53.5 NC_001847.1 + 17066 0.72 0.66028
Target:  5'- gGGCGgUAaacGGCCGGCGUGCCAg-- -3'
miRNA:   3'- -UCGCgAUcuuCUGGUCGCACGGUaau -5'
6477 5' -53.5 NC_001847.1 + 18473 0.68 0.855376
Target:  5'- cAGCGCcGGAcccacacgcaGGccACCAGCGUGCCc--- -3'
miRNA:   3'- -UCGCGaUCU----------UC--UGGUCGCACGGuaau -5'
6477 5' -53.5 NC_001847.1 + 18715 0.7 0.744123
Target:  5'- cAGCGCcgcgGGGAGcGCCAGCGgGCgGUUGa -3'
miRNA:   3'- -UCGCGa---UCUUC-UGGUCGCaCGgUAAU- -5'
6477 5' -53.5 NC_001847.1 + 21624 0.67 0.906624
Target:  5'- cGGCGCUu---GGCCGGCGcggGCCGc-- -3'
miRNA:   3'- -UCGCGAucuuCUGGUCGCa--CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 22025 0.66 0.935624
Target:  5'- cGGCGaccgUGGAAGcGCaCAGCGUGCgCAUg- -3'
miRNA:   3'- -UCGCg---AUCUUC-UG-GUCGCACG-GUAau -5'
6477 5' -53.5 NC_001847.1 + 22635 0.66 0.924809
Target:  5'- gGGCGCguccggGGAGGGCgGGCuUGCCc--- -3'
miRNA:   3'- -UCGCGa-----UCUUCUGgUCGcACGGuaau -5'
6477 5' -53.5 NC_001847.1 + 25388 0.66 0.924809
Target:  5'- gGGCGgaGGggGACCGcggaagcacuGCGgGCCAg-- -3'
miRNA:   3'- -UCGCgaUCuuCUGGU----------CGCaCGGUaau -5'
6477 5' -53.5 NC_001847.1 + 27698 0.68 0.863413
Target:  5'- aGGCGCgcGAGcGCCGGCGgGCCGc-- -3'
miRNA:   3'- -UCGCGauCUUcUGGUCGCaCGGUaau -5'
6477 5' -53.5 NC_001847.1 + 27915 0.71 0.702725
Target:  5'- cGCGCUugcGGAGGCCAGgGcgGCCGUc- -3'
miRNA:   3'- uCGCGAu--CUUCUGGUCgCa-CGGUAau -5'
6477 5' -53.5 NC_001847.1 + 27991 0.68 0.838646
Target:  5'- cGCGCUGGGccgcgcugcAGcGCgCGGCGUGCCGc-- -3'
miRNA:   3'- uCGCGAUCU---------UC-UG-GUCGCACGGUaau -5'
6477 5' -53.5 NC_001847.1 + 28690 0.69 0.818393
Target:  5'- cGGCGCUGGuGGACCuGGUGUacgcgcgccgcgacGCCAUg- -3'
miRNA:   3'- -UCGCGAUCuUCUGG-UCGCA--------------CGGUAau -5'
6477 5' -53.5 NC_001847.1 + 28894 0.68 0.878793
Target:  5'- gGGCGCUGccgcacguGgcGGCCuGCGUGgCCAUg- -3'
miRNA:   3'- -UCGCGAU--------CuuCUGGuCGCAC-GGUAau -5'
6477 5' -53.5 NC_001847.1 + 29169 0.73 0.603523
Target:  5'- aGGCGCUGGAGGcggcccgccgcgccGCCGGCGccGCCGg-- -3'
miRNA:   3'- -UCGCGAUCUUC--------------UGGUCGCa-CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 29292 0.67 0.886125
Target:  5'- cGGCGCUGGcggcaGAGGCC-GCG-GCCGc-- -3'
miRNA:   3'- -UCGCGAUC-----UUCUGGuCGCaCGGUaau -5'
6477 5' -53.5 NC_001847.1 + 30449 0.66 0.935624
Target:  5'- cGGCGCUGGGcaACCGGC-UGCUg--- -3'
miRNA:   3'- -UCGCGAUCUucUGGUCGcACGGuaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.