Results 21 - 40 of 247 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6478 | 3' | -55.9 | NC_001847.1 | + | 20613 | 0.72 | 0.502719 |
Target: 5'- uGAAUGUGUUCCCGCGCCGcgccgaccGCUGCa-- -3' miRNA: 3'- -UUUAUAUGAGGGCGCGGC--------CGACGcug -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 52275 | 0.72 | 0.502719 |
Target: 5'- ---cGUGC-CCgCGCGCCGGCUuugugugcGCGACc -3' miRNA: 3'- uuuaUAUGaGG-GCGCGGCCGA--------CGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 116437 | 0.72 | 0.512657 |
Target: 5'- -----cGCUCCCcgcgGCGCUGGCgGUGACg -3' miRNA: 3'- uuuauaUGAGGG----CGCGGCCGaCGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 39749 | 0.72 | 0.54293 |
Target: 5'- ---cGUugUCCCcgGCGCCGGCcucagagccgGCGGCg -3' miRNA: 3'- uuuaUAugAGGG--CGCGGCCGa---------CGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 51084 | 0.72 | 0.54293 |
Target: 5'- -----cGCuUCCCGgGCCGGCUgcucuaGCGACu -3' miRNA: 3'- uuuauaUG-AGGGCgCGGCCGA------CGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 14644 | 0.72 | 0.553154 |
Target: 5'- -----cGCUCgCGCGCCGcucGCUGCGAg -3' miRNA: 3'- uuuauaUGAGgGCGCGGC---CGACGCUg -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 8232 | 0.72 | 0.553154 |
Target: 5'- ----cUGCgCCaCGCGCUGGCcUGCGGCa -3' miRNA: 3'- uuuauAUGaGG-GCGCGGCCG-ACGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 97829 | 0.72 | 0.553154 |
Target: 5'- --cUGUGCUCggcgCGCGCgGGCUGCGcGCg -3' miRNA: 3'- uuuAUAUGAGg---GCGCGgCCGACGC-UG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 11305 | 0.71 | 0.563436 |
Target: 5'- aAGAUGgGCgcgCCCGCcgagGCCGGCggGCGGCu -3' miRNA: 3'- -UUUAUaUGa--GGGCG----CGGCCGa-CGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 78135 | 0.71 | 0.563436 |
Target: 5'- -----aGCgggCgCGCGCCGGCcUGCGGCu -3' miRNA: 3'- uuuauaUGa--GgGCGCGGCCG-ACGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 107707 | 0.71 | 0.573768 |
Target: 5'- -----gGCcCCCGCGCCG-CUGCGAa -3' miRNA: 3'- uuuauaUGaGGGCGCGGCcGACGCUg -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 62164 | 0.71 | 0.573768 |
Target: 5'- -----aGCUCCCGCGCgGGC-GCGuCc -3' miRNA: 3'- uuuauaUGAGGGCGCGgCCGaCGCuG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 85634 | 0.71 | 0.573768 |
Target: 5'- -----aGC-CCCGCGcCCGGCgaaGCGGCg -3' miRNA: 3'- uuuauaUGaGGGCGC-GGCCGa--CGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 4894 | 0.71 | 0.573768 |
Target: 5'- -----gGCcCCCGCGCCG-CUGCGAa -3' miRNA: 3'- uuuauaUGaGGGCGCGGCcGACGCUg -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 2546 | 0.71 | 0.584143 |
Target: 5'- -----cGCUCCCGcCGCCGGgCcgggGCGGCc -3' miRNA: 3'- uuuauaUGAGGGC-GCGGCC-Ga---CGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 105359 | 0.71 | 0.584143 |
Target: 5'- -----cGCUCCCGcCGCCGGgCcgggGCGGCc -3' miRNA: 3'- uuuauaUGAGGGC-GCGGCC-Ga---CGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 2346 | 0.71 | 0.59247 |
Target: 5'- -----gGCUCCCgccGCGCCGGCccggccgcgucgGCGGCg -3' miRNA: 3'- uuuauaUGAGGG---CGCGGCCGa-----------CGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 105159 | 0.71 | 0.59247 |
Target: 5'- -----gGCUCCCgccGCGCCGGCccggccgcgucgGCGGCg -3' miRNA: 3'- uuuauaUGAGGG---CGCGGCCGa-----------CGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 53230 | 0.71 | 0.593512 |
Target: 5'- -----aACgCCCucaugguGCGCUGGCUGCGGCg -3' miRNA: 3'- uuuauaUGaGGG-------CGCGGCCGACGCUG- -5' |
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6478 | 3' | -55.9 | NC_001847.1 | + | 101481 | 0.71 | 0.594555 |
Target: 5'- -----aGC-CCCGCGCgGGCcGCGGCc -3' miRNA: 3'- uuuauaUGaGGGCGCGgCCGaCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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