miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 5' -57.9 NC_001847.1 + 35669 1.09 0.001642
Target:  5'- gGAUCGCGCUGAUCUUGGCCCCGAGCGg -3'
miRNA:   3'- -CUAGCGCGACUAGAACCGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 99354 0.73 0.419986
Target:  5'- --cCGgGCgGAUCUUGGCCCCu-GCGa -3'
miRNA:   3'- cuaGCgCGaCUAGAACCGGGGcuCGC- -5'
6479 5' -57.9 NC_001847.1 + 66903 0.72 0.474524
Target:  5'- -uUCGCGCUGAUgcaagcgugCUUgcGGCCCCGccGCGg -3'
miRNA:   3'- cuAGCGCGACUA---------GAA--CCGGGGCu-CGC- -5'
6479 5' -57.9 NC_001847.1 + 39900 0.71 0.503091
Target:  5'- cGAUCGCGCccccGAUCgc-GCCCCGAucGCGc -3'
miRNA:   3'- -CUAGCGCGa---CUAGaacCGGGGCU--CGC- -5'
6479 5' -57.9 NC_001847.1 + 34028 0.7 0.542282
Target:  5'- --cCGCGCUGGgccaggCgaugGGCCCCGcGGCGc -3'
miRNA:   3'- cuaGCGCGACUa-----Gaa--CCGGGGC-UCGC- -5'
6479 5' -57.9 NC_001847.1 + 107048 0.7 0.56226
Target:  5'- uGUCGCGCgc-----GGCCCCGGGCa -3'
miRNA:   3'- cUAGCGCGacuagaaCCGGGGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 62906 0.7 0.572325
Target:  5'- gGGUgGCGCgGGUgCUcggGGCCCgCGGGCGg -3'
miRNA:   3'- -CUAgCGCGaCUA-GAa--CCGGG-GCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 64207 0.7 0.572325
Target:  5'- --aUGCGCgGGUCggGGUgCCCGGGCGg -3'
miRNA:   3'- cuaGCGCGaCUAGaaCCG-GGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 84350 0.7 0.582432
Target:  5'- --aCGCGCUGuUCaUGGUCCCGAagacgccgaGCGg -3'
miRNA:   3'- cuaGCGCGACuAGaACCGGGGCU---------CGC- -5'
6479 5' -57.9 NC_001847.1 + 89608 0.7 0.592575
Target:  5'- --aCGCGCUGcgCggcacGGCCCCGuccGCGc -3'
miRNA:   3'- cuaGCGCGACuaGaa---CCGGGGCu--CGC- -5'
6479 5' -57.9 NC_001847.1 + 4217 0.7 0.592575
Target:  5'- cGUCGCcgGCcucGGUCcUGGCCCCGAGgGc -3'
miRNA:   3'- cUAGCG--CGa--CUAGaACCGGGGCUCgC- -5'
6479 5' -57.9 NC_001847.1 + 107030 0.7 0.592575
Target:  5'- cGUCGCcgGCcucGGUCcUGGCCCCGAGgGc -3'
miRNA:   3'- cUAGCG--CGa--CUAGaACCGGGGCUCgC- -5'
6479 5' -57.9 NC_001847.1 + 14036 0.69 0.612939
Target:  5'- ---gGCGCUGGUC--GGCCgCGAGCc -3'
miRNA:   3'- cuagCGCGACUAGaaCCGGgGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 88160 0.68 0.660911
Target:  5'- -uUCGCguauucaccugccuGCUGcgCUUGGCCCgGGcGCGg -3'
miRNA:   3'- cuAGCG--------------CGACuaGAACCGGGgCU-CGC- -5'
6479 5' -57.9 NC_001847.1 + 44852 0.68 0.663965
Target:  5'- --gCGCGCUcgccgaGGUUUUGGCccaaCCCGAGCu -3'
miRNA:   3'- cuaGCGCGA------CUAGAACCG----GGGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 9902 0.68 0.674127
Target:  5'- cGUCGCGCUcg---UGGCCgCCGAGUa -3'
miRNA:   3'- cUAGCGCGAcuagaACCGG-GGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 104535 0.68 0.674127
Target:  5'- ---gGCGCUGcgCggcGGCCCCGGGg- -3'
miRNA:   3'- cuagCGCGACuaGaa-CCGGGGCUCgc -5'
6479 5' -57.9 NC_001847.1 + 5353 0.68 0.68122
Target:  5'- uGGUCGCGCgGcgCggccgGGCCcaggcuccggcgguCCGAGCGg -3'
miRNA:   3'- -CUAGCGCGaCuaGaa---CCGG--------------GGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 41607 0.68 0.694338
Target:  5'- cGUgGCGUUGuUCUgcuccgccgugaUGGCCgCGAGCGg -3'
miRNA:   3'- cUAgCGCGACuAGA------------ACCGGgGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 50006 0.68 0.695344
Target:  5'- --cCGCGCgcccaccgccugCUgGGCCCCGGGCGc -3'
miRNA:   3'- cuaGCGCGacua--------GAaCCGGGGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.