miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 5' -57.9 NC_001847.1 + 4217 0.7 0.592575
Target:  5'- cGUCGCcgGCcucGGUCcUGGCCCCGAGgGc -3'
miRNA:   3'- cUAGCG--CGa--CUAGaACCGGGGCUCgC- -5'
6479 5' -57.9 NC_001847.1 + 5353 0.68 0.68122
Target:  5'- uGGUCGCGCgGcgCggccgGGCCcaggcuccggcgguCCGAGCGg -3'
miRNA:   3'- -CUAGCGCGaCuaGaa---CCGG--------------GGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 5807 0.68 0.714343
Target:  5'- --cCGCGCuUGcgCUUGGCgCgCCGGGUGc -3'
miRNA:   3'- cuaGCGCG-ACuaGAACCG-G-GGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 5901 0.66 0.790835
Target:  5'- cGcgCGCGUUGGUC-UGGCagCCGcuaGGCGg -3'
miRNA:   3'- -CuaGCGCGACUAGaACCGg-GGC---UCGC- -5'
6479 5' -57.9 NC_001847.1 + 9902 0.67 0.734068
Target:  5'- cGAcCGCG-UGGUCUcgGGCCCCGcccccGCGg -3'
miRNA:   3'- -CUaGCGCgACUAGAa-CCGGGGCu----CGC- -5'
6479 5' -57.9 NC_001847.1 + 9902 0.68 0.674127
Target:  5'- cGUCGCGCUcg---UGGCCgCCGAGUa -3'
miRNA:   3'- cUAGCGCGAcuagaACCGG-GGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 14036 0.69 0.612939
Target:  5'- ---gGCGCUGGUC--GGCCgCGAGCc -3'
miRNA:   3'- cuagCGCGACUAGaaCCGGgGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 14394 0.67 0.772387
Target:  5'- -cUCGCcgaGCUGGcgUCgaGGCCCCGcucgcAGCGg -3'
miRNA:   3'- cuAGCG---CGACU--AGaaCCGGGGC-----UCGC- -5'
6479 5' -57.9 NC_001847.1 + 23838 0.67 0.724245
Target:  5'- --gCGCGCg---CacGGCCCCGAGCc -3'
miRNA:   3'- cuaGCGCGacuaGaaCCGGGGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 29409 0.67 0.772387
Target:  5'- --cCGCGCUGGcggCgcggaccgUGGCCCCGcucGCGc -3'
miRNA:   3'- cuaGCGCGACUa--Ga-------ACCGGGGCu--CGC- -5'
6479 5' -57.9 NC_001847.1 + 29694 0.66 0.781678
Target:  5'- uGAUgGCGCUGAUCgcuUGGgCgCGAgacuGCGg -3'
miRNA:   3'- -CUAgCGCGACUAGa--ACCgGgGCU----CGC- -5'
6479 5' -57.9 NC_001847.1 + 30632 0.66 0.781678
Target:  5'- uGAUCGUGCUcGAcgCcgUGGaCCCCGAGa- -3'
miRNA:   3'- -CUAGCGCGA-CUa-Ga-ACC-GGGGCUCgc -5'
6479 5' -57.9 NC_001847.1 + 31968 0.66 0.79985
Target:  5'- --gCGCGCgGGgcg-GGCCCCGGGgCGc -3'
miRNA:   3'- cuaGCGCGaCUagaaCCGGGGCUC-GC- -5'
6479 5' -57.9 NC_001847.1 + 32600 0.66 0.790835
Target:  5'- gGAUCGUGCUGcAUCU--GCCUgGAcGCGa -3'
miRNA:   3'- -CUAGCGCGAC-UAGAacCGGGgCU-CGC- -5'
6479 5' -57.9 NC_001847.1 + 34028 0.7 0.542282
Target:  5'- --cCGCGCUGGgccaggCgaugGGCCCCGcGGCGc -3'
miRNA:   3'- cuaGCGCGACUa-----Gaa--CCGGGGC-UCGC- -5'
6479 5' -57.9 NC_001847.1 + 35438 0.66 0.817418
Target:  5'- cAUCGCGCUGA-CUUuacggcGGCCCgCGccGCGc -3'
miRNA:   3'- cUAGCGCGACUaGAA------CCGGG-GCu-CGC- -5'
6479 5' -57.9 NC_001847.1 + 35669 1.09 0.001642
Target:  5'- gGAUCGCGCUGAUCUUGGCCCCGAGCGg -3'
miRNA:   3'- -CUAGCGCGACUAGAACCGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 35997 0.66 0.79985
Target:  5'- --cCGCGCUGcaggcGGCCgCGGGCGu -3'
miRNA:   3'- cuaGCGCGACuagaaCCGGgGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 38148 0.67 0.75344
Target:  5'- -uUCGCGCgGcgCgccGCCCCGAGgGa -3'
miRNA:   3'- cuAGCGCGaCuaGaacCGGGGCUCgC- -5'
6479 5' -57.9 NC_001847.1 + 39900 0.71 0.503091
Target:  5'- cGAUCGCGCccccGAUCgc-GCCCCGAucGCGc -3'
miRNA:   3'- -CUAGCGCGa---CUAGaacCGGGGCU--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.