miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 5' -57.9 NC_001847.1 + 41607 0.68 0.694338
Target:  5'- cGUgGCGUUGuUCUgcuccgccgugaUGGCCgCGAGCGg -3'
miRNA:   3'- cUAgCGCGACuAGA------------ACCGGgGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 44852 0.68 0.663965
Target:  5'- --gCGCGCUcgccgaGGUUUUGGCccaaCCCGAGCu -3'
miRNA:   3'- cuaGCGCGA------CUAGAACCG----GGGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 50006 0.68 0.695344
Target:  5'- --cCGCGCgcccaccgccugCUgGGCCCCGGGCGc -3'
miRNA:   3'- cuaGCGCGacua--------GAaCCGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 50069 0.66 0.808713
Target:  5'- -cUgGCGCUGAUCaUUGGCaCCGcGCc -3'
miRNA:   3'- cuAgCGCGACUAG-AACCGgGGCuCGc -5'
6479 5' -57.9 NC_001847.1 + 53032 0.66 0.790835
Target:  5'- --gCGCGCUcgGGcCUcGGCUCCGAGCc -3'
miRNA:   3'- cuaGCGCGA--CUaGAaCCGGGGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 62906 0.7 0.572325
Target:  5'- gGGUgGCGCgGGUgCUcggGGCCCgCGGGCGg -3'
miRNA:   3'- -CUAgCGCGaCUA-GAa--CCGGG-GCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 64207 0.7 0.572325
Target:  5'- --aUGCGCgGGUCggGGUgCCCGGGCGg -3'
miRNA:   3'- cuaGCGCGaCUAGaaCCG-GGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 64970 0.66 0.781678
Target:  5'- --aCGUGCUGGcCagcGGCCCgGAGCa -3'
miRNA:   3'- cuaGCGCGACUaGaa-CCGGGgCUCGc -5'
6479 5' -57.9 NC_001847.1 + 65742 0.67 0.772387
Target:  5'- ---gGCGCUcGAgagCguggUGGCCCgCGGGCGc -3'
miRNA:   3'- cuagCGCGA-CUa--Ga---ACCGGG-GCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 66903 0.72 0.474524
Target:  5'- -uUCGCGCUGAUgcaagcgugCUUgcGGCCCCGccGCGg -3'
miRNA:   3'- cuAGCGCGACUA---------GAA--CCGGGGCu-CGC- -5'
6479 5' -57.9 NC_001847.1 + 67348 0.66 0.808713
Target:  5'- cAUCGCGCgGAcg-UGGCCCUcGGCu -3'
miRNA:   3'- cUAGCGCGaCUagaACCGGGGcUCGc -5'
6479 5' -57.9 NC_001847.1 + 71434 0.67 0.772387
Target:  5'- gGAggGUGCacacgacGAggUUGGCCCCGGGCGc -3'
miRNA:   3'- -CUagCGCGa------CUagAACCGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 74130 0.66 0.790835
Target:  5'- cGUgGUGCUGcgCgUGGCgCCgGGGCGa -3'
miRNA:   3'- cUAgCGCGACuaGaACCG-GGgCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 74287 0.67 0.772387
Target:  5'- -cUCGCGCUGGccUCggcgGGCgCgGAGCu -3'
miRNA:   3'- cuAGCGCGACU--AGaa--CCGgGgCUCGc -5'
6479 5' -57.9 NC_001847.1 + 77711 0.67 0.724245
Target:  5'- cGcgCGCGCUGGUgcgcgCUUGGCgCgCGuGCGa -3'
miRNA:   3'- -CuaGCGCGACUA-----GAACCGgG-GCuCGC- -5'
6479 5' -57.9 NC_001847.1 + 78685 0.66 0.781678
Target:  5'- -cUCGCGCca--CUUGGCCagCGAGCa -3'
miRNA:   3'- cuAGCGCGacuaGAACCGGg-GCUCGc -5'
6479 5' -57.9 NC_001847.1 + 83923 0.66 0.789926
Target:  5'- ---aGCGCUaGAUCUUgcaccacGGCCagcaCCGAGCGc -3'
miRNA:   3'- cuagCGCGA-CUAGAA-------CCGG----GGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 84350 0.7 0.582432
Target:  5'- --aCGCGCUGuUCaUGGUCCCGAagacgccgaGCGg -3'
miRNA:   3'- cuaGCGCGACuAGaACCGGGGCU---------CGC- -5'
6479 5' -57.9 NC_001847.1 + 87239 0.67 0.762972
Target:  5'- -uUCG-GCUGGUaccggcUGcGCCCCGGGCGc -3'
miRNA:   3'- cuAGCgCGACUAga----AC-CGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 88160 0.68 0.660911
Target:  5'- -uUCGCguauucaccugccuGCUGcgCUUGGCCCgGGcGCGg -3'
miRNA:   3'- cuAGCG--------------CGACuaGAACCGGGgCU-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.