Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6479 | 5' | -57.9 | NC_001847.1 | + | 9902 | 0.68 | 0.674127 |
Target: 5'- cGUCGCGCUcg---UGGCCgCCGAGUa -3' miRNA: 3'- cUAGCGCGAcuagaACCGG-GGCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 5353 | 0.68 | 0.68122 |
Target: 5'- uGGUCGCGCgGcgCggccgGGCCcaggcuccggcgguCCGAGCGg -3' miRNA: 3'- -CUAGCGCGaCuaGaa---CCGG--------------GGCUCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 41607 | 0.68 | 0.694338 |
Target: 5'- cGUgGCGUUGuUCUgcuccgccgugaUGGCCgCGAGCGg -3' miRNA: 3'- cUAgCGCGACuAGA------------ACCGGgGCUCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 5807 | 0.68 | 0.714343 |
Target: 5'- --cCGCGCuUGcgCUUGGCgCgCCGGGUGc -3' miRNA: 3'- cuaGCGCG-ACuaGAACCG-G-GGCUCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 23838 | 0.67 | 0.724245 |
Target: 5'- --gCGCGCg---CacGGCCCCGAGCc -3' miRNA: 3'- cuaGCGCGacuaGaaCCGGGGCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 116373 | 0.66 | 0.77983 |
Target: 5'- -cUCGCGCUGucggccgccgccuuaGccgcggcggcggcgcUCUgGGCCCCGGGCc -3' miRNA: 3'- cuAGCGCGAC---------------U---------------AGAaCCGGGGCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 71434 | 0.67 | 0.772387 |
Target: 5'- gGAggGUGCacacgacGAggUUGGCCCCGGGCGc -3' miRNA: 3'- -CUagCGCGa------CUagAACCGGGGCUCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 29409 | 0.67 | 0.772387 |
Target: 5'- --cCGCGCUGGcggCgcggaccgUGGCCCCGcucGCGc -3' miRNA: 3'- cuaGCGCGACUa--Ga-------ACCGGGGCu--CGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 14394 | 0.67 | 0.772387 |
Target: 5'- -cUCGCcgaGCUGGcgUCgaGGCCCCGcucgcAGCGg -3' miRNA: 3'- cuAGCG---CGACU--AGaaCCGGGGC-----UCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 125547 | 0.67 | 0.771451 |
Target: 5'- cGGUCGUccccgcggcugcgGCUcGAUCgcGGCCgCGGGCGg -3' miRNA: 3'- -CUAGCG-------------CGA-CUAGaaCCGGgGCUCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 87239 | 0.67 | 0.762972 |
Target: 5'- -uUCG-GCUGGUaccggcUGcGCCCCGGGCGc -3' miRNA: 3'- cuAGCgCGACUAga----AC-CGGGGCUCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 30632 | 0.66 | 0.781678 |
Target: 5'- uGAUCGUGCUcGAcgCcgUGGaCCCCGAGa- -3' miRNA: 3'- -CUAGCGCGA-CUa-Ga-ACC-GGGGCUCgc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 128358 | 0.66 | 0.781678 |
Target: 5'- --aCGCGCUGcuggUGGCCaCgGAGCa -3' miRNA: 3'- cuaGCGCGACuagaACCGG-GgCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 78685 | 0.66 | 0.781678 |
Target: 5'- -cUCGCGCca--CUUGGCCagCGAGCa -3' miRNA: 3'- cuAGCGCGacuaGAACCGGg-GCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 83923 | 0.66 | 0.789926 |
Target: 5'- ---aGCGCUaGAUCUUgcaccacGGCCagcaCCGAGCGc -3' miRNA: 3'- cuagCGCGA-CUAGAA-------CCGG----GGCUCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 5901 | 0.66 | 0.790835 |
Target: 5'- cGcgCGCGUUGGUC-UGGCagCCGcuaGGCGg -3' miRNA: 3'- -CuaGCGCGACUAGaACCGg-GGC---UCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 32600 | 0.66 | 0.790835 |
Target: 5'- gGAUCGUGCUGcAUCU--GCCUgGAcGCGa -3' miRNA: 3'- -CUAGCGCGAC-UAGAacCGGGgCU-CGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 31968 | 0.66 | 0.79985 |
Target: 5'- --gCGCGCgGGgcg-GGCCCCGGGgCGc -3' miRNA: 3'- cuaGCGCGaCUagaaCCGGGGCUC-GC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 50069 | 0.66 | 0.808713 |
Target: 5'- -cUgGCGCUGAUCaUUGGCaCCGcGCc -3' miRNA: 3'- cuAgCGCGACUAG-AACCGgGGCuCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 35669 | 1.09 | 0.001642 |
Target: 5'- gGAUCGCGCUGAUCUUGGCCCCGAGCGg -3' miRNA: 3'- -CUAGCGCGACUAGAACCGGGGCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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