miRNA display CGI


Results 61 - 80 of 969 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 77015 0.76 0.124143
Target:  5'- aCCAGgAGGuccUGGCGCucaucCGCCgCGCCGCa -3'
miRNA:   3'- gGGUCgUCCu--ACCGCG-----GCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 124264 0.76 0.126621
Target:  5'- gCC-GCAGGcggucugccugGGCGCCcgcGCCCGCCGCg -3'
miRNA:   3'- gGGuCGUCCua---------CCGCGG---CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 47546 0.76 0.127247
Target:  5'- cUCCAGCAcGGcgGGCGCggggaGCCCggcgGCCGCg -3'
miRNA:   3'- -GGGUCGU-CCuaCCGCGg----CGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 47733 0.76 0.127247
Target:  5'- gCgCGGCGGGcggGGCcCCGCCCGCgCGCa -3'
miRNA:   3'- -GgGUCGUCCua-CCGcGGCGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 68439 0.76 0.127247
Target:  5'- -aCAGCAGcAUGGCGCgggagCGCCCGCUGUg -3'
miRNA:   3'- ggGUCGUCcUACCGCG-----GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 102040 0.76 0.130423
Target:  5'- gUCGGcCAGGAUGGCGCgagcgcuguacUGCgCGCCGCg -3'
miRNA:   3'- gGGUC-GUCCUACCGCG-----------GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 96018 0.76 0.130423
Target:  5'- cCCCAGCGcGGc--GCGUCGgCCGCCGCg -3'
miRNA:   3'- -GGGUCGU-CCuacCGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 48622 0.76 0.133672
Target:  5'- gCCAGCAcGcgGGCGCCcagCCGCCGCg -3'
miRNA:   3'- gGGUCGUcCuaCCGCGGcg-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 66201 0.76 0.133672
Target:  5'- gCCUGGCuGGA-GGCGCaGCCCGCgGCc -3'
miRNA:   3'- -GGGUCGuCCUaCCGCGgCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 28076 0.76 0.133672
Target:  5'- gCCCGGUcuGGugcuGUGGCGCCuGCCCgggGCCGCg -3'
miRNA:   3'- -GGGUCGu-CC----UACCGCGG-CGGG---CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 116121 0.76 0.13599
Target:  5'- gCCGGCGGGgucacgcgcgaagaGgccgagGGCGCCGCCCGUgCGCu -3'
miRNA:   3'- gGGUCGUCC--------------Ua-----CCGCGGCGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 28517 0.76 0.136995
Target:  5'- gCCCGGCAGcGcgccGcCGCCGCCCGgCCGCg -3'
miRNA:   3'- -GGGUCGUC-Cuac-C-GCGGCGGGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 131330 0.76 0.136995
Target:  5'- gCCCGGCAGcGcgccGcCGCCGCCCGgCCGCg -3'
miRNA:   3'- -GGGUCGUC-Cuac-C-GCGGCGGGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 100844 0.75 0.140393
Target:  5'- cUCCGGcCAGGGccgGaGCGCCgGCCCGCCGg -3'
miRNA:   3'- -GGGUC-GUCCUa--C-CGCGG-CGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 69901 0.75 0.140393
Target:  5'- gCCCGGguGGcgGaaaaGCGCCGCCC-CCGUu -3'
miRNA:   3'- -GGGUCguCCuaC----CGCGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 106793 0.75 0.140393
Target:  5'- -gCAGCGGGcgGaugacggccGCGCUGCCCGCCGg -3'
miRNA:   3'- ggGUCGUCCuaC---------CGCGGCGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 59496 0.75 0.140393
Target:  5'- gCCGGCAGGggGuGCGCCGag-GCCGCa -3'
miRNA:   3'- gGGUCGUCCuaC-CGCGGCgggCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 49245 0.75 0.140393
Target:  5'- -aCGGCGGGGUGGCGCCGgCgaacgCGCuCGCu -3'
miRNA:   3'- ggGUCGUCCUACCGCGGCgG-----GCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 32362 0.75 0.140393
Target:  5'- cCCCGcGCGGGggGGCGCCGgC-GUCGCg -3'
miRNA:   3'- -GGGU-CGUCCuaCCGCGGCgGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 57665 0.75 0.142818
Target:  5'- gCCGGCGGGccgggccgGGCGCCcggcgcccgccccaGCCCGCCGa -3'
miRNA:   3'- gGGUCGUCCua------CCGCGG--------------CGGGCGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.