miRNA display CGI


Results 61 - 80 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 7810 0.68 0.388442
Target:  5'- gCCgCGGCAGccggccgccucGGCGCCGgUCGCCGUg -3'
miRNA:   3'- -GG-GUCGUCcua--------CCGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 7848 0.68 0.424428
Target:  5'- cUCCGGCAccgccGGUGGCGCCuGCagaggCgGCCGCc -3'
miRNA:   3'- -GGGUCGUc----CUACCGCGG-CG-----GgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 7899 0.71 0.265691
Target:  5'- gCCGcGCGGGgcGcGCGgCGgCCGCCGCu -3'
miRNA:   3'- gGGU-CGUCCuaC-CGCgGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 8042 0.69 0.375862
Target:  5'- gCCCGGU-GGAcccaaagccGCGCgGCCCGCgCGCa -3'
miRNA:   3'- -GGGUCGuCCUac-------CGCGgCGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 8071 0.67 0.466754
Target:  5'- gCCAGCGGGggGGC-CUGUCCaccacggcgaggcGCCGa -3'
miRNA:   3'- gGGUCGUCCuaCCGcGGCGGG-------------CGGCg -5'
6481 5' -64.2 NC_001847.1 + 9521 0.66 0.516718
Target:  5'- gCCgAGCGGGcgGcGCGCuagcguccgugcgugCGCCagCGCUGCa -3'
miRNA:   3'- -GGgUCGUCCuaC-CGCG---------------GCGG--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 9653 0.74 0.166421
Target:  5'- cUCgAGCAGccgGGCGUccucgCGCCCGCCGCg -3'
miRNA:   3'- -GGgUCGUCcuaCCGCG-----GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 9812 0.77 0.112418
Target:  5'- uCCCGGCAGaccGGC-CCgGCCCGCCGCc -3'
miRNA:   3'- -GGGUCGUCcuaCCGcGG-CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 9899 0.66 0.550556
Target:  5'- gCCCGaccGCGuGGucucgGGCcCCGCCC-CCGCg -3'
miRNA:   3'- -GGGU---CGU-CCua---CCGcGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 10162 0.71 0.253921
Target:  5'- gCCCgAGCAGGccGGC-CCGCUgCGCCGg -3'
miRNA:   3'- -GGG-UCGUCCuaCCGcGGCGG-GCGGCg -5'
6481 5' -64.2 NC_001847.1 + 10208 0.66 0.503782
Target:  5'- gCCGcCGGGcccagGGCG-CGCCCGCUGUc -3'
miRNA:   3'- gGGUcGUCCua---CCGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 10353 0.68 0.427798
Target:  5'- -aCGGCGGcGAgggGGcCGCCGCCgaaagccccccccggUGCCGCc -3'
miRNA:   3'- ggGUCGUC-CUa--CC-GCGGCGG---------------GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 10370 0.67 0.458814
Target:  5'- uCCCuGCucGGGU--CGCCGCUCGCgGCg -3'
miRNA:   3'- -GGGuCGu-CCUAccGCGGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 10420 0.66 0.550556
Target:  5'- cCCCGcGCGGuucGcGCuGCCGCCC-CCGCg -3'
miRNA:   3'- -GGGU-CGUCcuaC-CG-CGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 10551 0.7 0.331189
Target:  5'- aCCCGcGCccGGccGGCGCCggGCCCGgCGCc -3'
miRNA:   3'- -GGGU-CGu-CCuaCCGCGG--CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 10591 0.73 0.187585
Target:  5'- cCCCGcgcgcGCGGGccGGCGCCgGCCCG-CGCc -3'
miRNA:   3'- -GGGU-----CGUCCuaCCGCGG-CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 10866 0.7 0.324135
Target:  5'- gCgCGGCGGGcgcgGGCGCCcaggcagaccGCCUGCgGCa -3'
miRNA:   3'- -GgGUCGUCCua--CCGCGG----------CGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 11168 0.71 0.253921
Target:  5'- aCCGGCgucGGGAgcuggGGCuGCCGCUgGuCCGCg -3'
miRNA:   3'- gGGUCG---UCCUa----CCG-CGGCGGgC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 11326 0.68 0.399674
Target:  5'- gCCGGCGGGcggcUGGCGCCGgagcgggagcaCUCGUaCGCg -3'
miRNA:   3'- gGGUCGUCCu---ACCGCGGC-----------GGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 11327 0.71 0.290549
Target:  5'- cUCCAacGcCAGGAcGGCGCCuGCcgcugccgCCGCCGCg -3'
miRNA:   3'- -GGGU--C-GUCCUaCCGCGG-CG--------GGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.