Results 61 - 80 of 969 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 55459 | 0.77 | 0.101734 |
Target: 5'- gCCGGCGGGgcGcGCGCCGCgCUaGCCGCu -3' miRNA: 3'- gGGUCGUCCuaC-CGCGGCG-GG-CGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 55510 | 0.77 | 0.104312 |
Target: 5'- gCCCuGCugc-UGGCGgCGCCCGCCGCg -3' miRNA: 3'- -GGGuCGuccuACCGCgGCGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 47546 | 0.76 | 0.127247 |
Target: 5'- cUCCAGCAcGGcgGGCGCggggaGCCCggcgGCCGCg -3' miRNA: 3'- -GGGUCGU-CCuaCCGCGg----CGGG----CGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 66201 | 0.76 | 0.133672 |
Target: 5'- gCCUGGCuGGA-GGCGCaGCCCGCgGCc -3' miRNA: 3'- -GGGUCGuCCUaCCGCGgCGGGCGgCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 28076 | 0.76 | 0.133672 |
Target: 5'- gCCCGGUcuGGugcuGUGGCGCCuGCCCgggGCCGCg -3' miRNA: 3'- -GGGUCGu-CC----UACCGCGG-CGGG---CGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 116121 | 0.76 | 0.13599 |
Target: 5'- gCCGGCGGGgucacgcgcgaagaGgccgagGGCGCCGCCCGUgCGCu -3' miRNA: 3'- gGGUCGUCC--------------Ua-----CCGCGGCGGGCG-GCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 131330 | 0.76 | 0.136995 |
Target: 5'- gCCCGGCAGcGcgccGcCGCCGCCCGgCCGCg -3' miRNA: 3'- -GGGUCGUC-Cuac-C-GCGGCGGGC-GGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 59496 | 0.75 | 0.140393 |
Target: 5'- gCCGGCAGGggGuGCGCCGag-GCCGCa -3' miRNA: 3'- gGGUCGUCCuaC-CGCGGCgggCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 100844 | 0.75 | 0.140393 |
Target: 5'- cUCCGGcCAGGGccgGaGCGCCgGCCCGCCGg -3' miRNA: 3'- -GGGUC-GUCCUa--C-CGCGG-CGGGCGGCg -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 34528 | 0.75 | 0.143869 |
Target: 5'- gCCGGC--GAU-GCGCCGCCCGCCGg -3' miRNA: 3'- gGGUCGucCUAcCGCGGCGGGCGGCg -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 77015 | 0.76 | 0.124143 |
Target: 5'- aCCAGgAGGuccUGGCGCucaucCGCCgCGCCGCa -3' miRNA: 3'- gGGUCgUCCu--ACCGCG-----GCGG-GCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 87410 | 0.76 | 0.12111 |
Target: 5'- ---cGCGGGcggGGCcCCGCCCGCCGCg -3' miRNA: 3'- ggguCGUCCua-CCGcGGCGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 106758 | 0.77 | 0.106951 |
Target: 5'- gCCgCGGCGGGGggGGCGCCGUcuCCGgCGCg -3' miRNA: 3'- -GG-GUCGUCCUa-CCGCGGCG--GGCgGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 93467 | 0.77 | 0.108564 |
Target: 5'- cCCCAGCAGGAUcuccuugaagaGCCGCgUGCCGCg -3' miRNA: 3'- -GGGUCGUCCUAccg--------CGGCGgGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 45260 | 0.77 | 0.109652 |
Target: 5'- gCCGGCGuGAgcgcGGCGaaGCCCGCCGCg -3' miRNA: 3'- gGGUCGUcCUa---CCGCggCGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 112625 | 0.77 | 0.112418 |
Target: 5'- uCCCGGCAGaccGGC-CCgGCCCGCCGCc -3' miRNA: 3'- -GGGUCGUCcuaCCGcGG-CGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 13118 | 0.77 | 0.112418 |
Target: 5'- gCCGgggcgcGCGGGcgGcgccGCGCCGCCUGCCGCg -3' miRNA: 3'- gGGU------CGUCCuaC----CGCGGCGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 105255 | 0.77 | 0.115248 |
Target: 5'- gCCGGCAGGGc--CGCCGCCuCGCCGUc -3' miRNA: 3'- gGGUCGUCCUaccGCGGCGG-GCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 132177 | 0.77 | 0.115248 |
Target: 5'- cCCCGGCGGcGcUGcGCGCCGaggcggCCGCCGCg -3' miRNA: 3'- -GGGUCGUC-CuAC-CGCGGCg-----GGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 33875 | 0.76 | 0.12111 |
Target: 5'- uUCUuGCAGGA-GGCGCCGCCgcgcgugGCCGCg -3' miRNA: 3'- -GGGuCGUCCUaCCGCGGCGGg------CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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