miRNA display CGI

Results 61 - 80 of 969 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6481	5'	-64.2	NC_001847.1	+	115970	0.66	0.530724
	Target:  5'- cCCCGccgugcugcGCGGGGUaacaacgGGCGCgG-CCGCUGCc -3' miRNA:   3'- -GGGU---------CGUCCUA-------CCGCGgCgGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	4221	0.66	0.522303
	Target:  5'- gCCGGCcucGGuccUGGCcccgagggcaccGCCGCCCcCCGCc -3' miRNA:   3'- gGGUCGu--CCu--ACCG------------CGGCGGGcGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	28687	0.66	0.550556
	Target:  5'- aCgCGGCGcugguGGAccUGGUGUaCGCgCGCCGCg -3' miRNA:   3'- -GgGUCGU-----CCU--ACCGCG-GCGgGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	103199	0.66	0.550556
	Target:  5'- gCCgCGGCAGGcucgucCGCUuaCCCGCCGCg -3' miRNA:   3'- -GG-GUCGUCCuacc--GCGGc-GGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	118653	0.66	0.547708
	Target:  5'- gCCGcgcGCGGGA-GGCGCaagagagguguccgCGCUcugCGCCGCg -3' miRNA:   3'- gGGU---CGUCCUaCCGCG--------------GCGG---GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	120024	0.66	0.541082
	Target:  5'- gCCAGCaccgccgccgucAGGGccgucagcaUGaGCGCgGCCCcgcuGCCGCa -3' miRNA:   3'- gGGUCG------------UCCU---------AC-CGCGgCGGG----CGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	99553	0.66	0.541082
	Target:  5'- gCgCAGCAGGuucuugaGGUugGCCaGCCCGgCGCc -3' miRNA:   3'- -GgGUCGUCCua-----CCG--CGG-CGGGCgGCG- -5'
6481	5'	-64.2	NC_001847.1	+	60893	0.66	0.53825
	Target:  5'- cCCCAGCAGcGgcGGCagcaggcauaccgcGUC-CCCGuuGCa -3' miRNA:   3'- -GGGUCGUC-CuaCCG--------------CGGcGGGCggCG- -5'
6481	5'	-64.2	NC_001847.1	+	27853	0.66	0.531663
	Target:  5'- gCCGGCGccagggacgcGGggGGCGCCGaggacgcggaCGUCGCg -3' miRNA:   3'- gGGUCGU----------CCuaCCGCGGCgg--------GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	68722	0.66	0.531663
	Target:  5'- uCCCuGgAGGGUGuaCGUCaGCCCgcGCCGCg -3' miRNA:   3'- -GGGuCgUCCUACc-GCGG-CGGG--CGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	57206	0.66	0.494629
	Target:  5'- -aCGGCAGGAcgccccGGcCGCCgggGCUCGUCGCc -3' miRNA:   3'- ggGUCGUCCUa-----CC-GCGG---CGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	44086	0.66	0.494629
	Target:  5'- gCCuGCuGc--GGCGUcugCGCCCGCCGCc -3' miRNA:   3'- gGGuCGuCcuaCCGCG---GCGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	1161	0.66	0.522303
	Target:  5'- cUCCGGCAGc---GCgGCCGCgcagaaggccaCCGCCGCg -3' miRNA:   3'- -GGGUCGUCcuacCG-CGGCG-----------GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	51946	0.66	0.522303
	Target:  5'- gCCCaAGCucGucUGcGCGCCcCCCGCCGUc -3' miRNA:   3'- -GGG-UCGucCu-AC-CGCGGcGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	119511	0.66	0.513008
	Target:  5'- gCCCgAGCccGGAggGGCGgCGgCCGCgGCc -3' miRNA:   3'- -GGG-UCGu-CCUa-CCGCgGCgGGCGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	86335	0.66	0.513008
	Target:  5'- gCCCGGaCAuccccGAUGGCGCCGgCgaggCGcCCGCa -3' miRNA:   3'- -GGGUC-GUc----CUACCGCGGCgG----GC-GGCG- -5'
6481	5'	-64.2	NC_001847.1	+	27311	0.66	0.507464
	Target:  5'- gCCCgAGCuuccccuccGCGCCGCcgCCGCCGCg -3' miRNA:   3'- -GGG-UCGuccuac---CGCGGCG--GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	93833	0.66	0.503782
	Target:  5'- aCCGGCcGGc-GGCGCCGgaaaCGUCGCg -3' miRNA:   3'- gGGUCGuCCuaCCGCGGCgg--GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	120800	0.66	0.503782
	Target:  5'- gUCGGCAGca-GGCaccccuucuCUGCCCGCCGCu -3' miRNA:   3'- gGGUCGUCcuaCCGc--------GGCGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	2951	0.66	0.499196
	Target:  5'- cUCCAGCGcGGcgGccgccucggcgcgcaGCGCCGCCggggccggcgcuggaGCCGCg -3' miRNA:   3'- -GGGUCGU-CCuaC---------------CGCGGCGGg--------------CGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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