miRNA display CGI


Results 1 - 20 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 5' -67.8 NC_001847.1 + 135064 0.66 0.358288
Target:  5'- gCGCU-CCGCgcccaucccccaccCCGC-CCCcGCCCGCCGc -3'
miRNA:   3'- -GUGAcGGCG--------------GGCGaGGGcCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 134712 0.75 0.094596
Target:  5'- uGCUGCCGCcgccgCCGC-CCCcGCCCGCCc -3'
miRNA:   3'- gUGACGGCG-----GGCGaGGGcCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 134682 0.66 0.353148
Target:  5'- uGCUGCCGCcgCCGC-CgCCGcCgCCGCCGc -3'
miRNA:   3'- gUGACGGCG--GGCGaG-GGCcG-GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 134379 0.67 0.298146
Target:  5'- gGC-GCCGCCgGCggcgggCCGGCCuCGCCc -3'
miRNA:   3'- gUGaCGGCGGgCGag----GGCCGG-GCGGc -5'
6483 5' -67.8 NC_001847.1 + 134254 0.66 0.383221
Target:  5'- gGCgGCCGCggCgGC-CCCGGCgcgggCCGCCGc -3'
miRNA:   3'- gUGaCGGCG--GgCGaGGGCCG-----GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 134158 0.66 0.378603
Target:  5'- uGCcGCCGCCgGCggcggaagccccgCCGGCCCggguGCCGg -3'
miRNA:   3'- gUGaCGGCGGgCGag-----------GGCCGGG----CGGC- -5'
6483 5' -67.8 NC_001847.1 + 134045 0.68 0.261419
Target:  5'- gGCggcGCCGCCCGCggCCgCGGCgC-CCGg -3'
miRNA:   3'- gUGa--CGGCGGGCGa-GG-GCCGgGcGGC- -5'
6483 5' -67.8 NC_001847.1 + 133995 0.7 0.19452
Target:  5'- gCGCUGCCGgagCCGCgcgCCgaGGCgCCGCCGc -3'
miRNA:   3'- -GUGACGGCg--GGCGa--GGg-CCG-GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 133945 0.69 0.22846
Target:  5'- aGCUGgCGCCCgacgaGCUgCCGGCCgCGgCGg -3'
miRNA:   3'- gUGACgGCGGG-----CGAgGGCCGG-GCgGC- -5'
6483 5' -67.8 NC_001847.1 + 133902 0.72 0.146556
Target:  5'- cCGCUGCgGCCgGUguaCCUGGCCUGCgGg -3'
miRNA:   3'- -GUGACGgCGGgCGa--GGGCCGGGCGgC- -5'
6483 5' -67.8 NC_001847.1 + 133746 0.66 0.383221
Target:  5'- --gUGCCGCCgCGCgaguaCCGGCagcgcgugCUGCCGg -3'
miRNA:   3'- gugACGGCGG-GCGag---GGCCG--------GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 133706 0.69 0.223321
Target:  5'- aCACgGUgGCCaCGCgCCUgGGCCCGCCa -3'
miRNA:   3'- -GUGaCGgCGG-GCGaGGG-CCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 133532 0.66 0.345895
Target:  5'- uGCUGCCGCggcgcagugcgCCGCgCgCUGGCCCGagCGg -3'
miRNA:   3'- gUGACGGCG-----------GGCGaG-GGCCGGGCg-GC- -5'
6483 5' -67.8 NC_001847.1 + 133474 0.66 0.391001
Target:  5'- aACUgGCCGCgCGacggCCCGGCC-GUCGg -3'
miRNA:   3'- gUGA-CGGCGgGCga--GGGCCGGgCGGC- -5'
6483 5' -67.8 NC_001847.1 + 133032 0.69 0.239037
Target:  5'- gGC-GCUGgCCGagaUCgCGGCCCGCCGc -3'
miRNA:   3'- gUGaCGGCgGGCg--AGgGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 132945 0.7 0.208012
Target:  5'- cUACUGCCGCCCcgaggucGCggCgCGGCUCGCgGa -3'
miRNA:   3'- -GUGACGGCGGG-------CGa-GgGCCGGGCGgC- -5'
6483 5' -67.8 NC_001847.1 + 132888 0.67 0.305299
Target:  5'- cCGCgUGCCGCCCGgggacuaccacacgCCCGcGCCCagcGCCGc -3'
miRNA:   3'- -GUG-ACGGCGGGCga------------GGGC-CGGG---CGGC- -5'
6483 5' -67.8 NC_001847.1 + 132823 0.73 0.129952
Target:  5'- cCGCUGcCCGCCCGCgugcuggggCCCaugccgcccggcGGCCCcGCCGc -3'
miRNA:   3'- -GUGAC-GGCGGGCGa--------GGG------------CCGGG-CGGC- -5'
6483 5' -67.8 NC_001847.1 + 132782 0.67 0.331712
Target:  5'- cCGCcGCCGCCgaCGCggCCgGGCCgGCgCGg -3'
miRNA:   3'- -GUGaCGGCGG--GCGa-GGgCCGGgCG-GC- -5'
6483 5' -67.8 NC_001847.1 + 132683 0.7 0.20374
Target:  5'- gCGCcGCCGCCCGCUCgaUCGggaGCUCGCUGc -3'
miRNA:   3'- -GUGaCGGCGGGCGAG--GGC---CGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.