miRNA display CGI


Results 21 - 40 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 5' -67.8 NC_001847.1 + 132596 0.69 0.255668
Target:  5'- ---gGCCGCCCcggCCCGGCggcgggagcgCCGCCGg -3'
miRNA:   3'- gugaCGGCGGGcgaGGGCCG----------GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 132579 0.69 0.250022
Target:  5'- gCGCaGgCGCCCGCg-CCGaagacaGCCCGCCGg -3'
miRNA:   3'- -GUGaCgGCGGGCGagGGC------CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 132380 0.67 0.324782
Target:  5'- gGCgggGgCGCCgGCg-CCGGCgCCGCCGc -3'
miRNA:   3'- gUGa--CgGCGGgCGagGGCCG-GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 132345 0.71 0.17717
Target:  5'- gGCUgGCgGCCgCGCUCgCGGCCCuggaggccGCCGg -3'
miRNA:   3'- gUGA-CGgCGG-GCGAGgGCCGGG--------CGGC- -5'
6483 5' -67.8 NC_001847.1 + 132299 0.69 0.244478
Target:  5'- gCGCUGgCGCgCGCgcugUUCaGCCCGCCGg -3'
miRNA:   3'- -GUGACgGCGgGCGa---GGGcCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 132199 0.67 0.331712
Target:  5'- gGCgGCCGCCgCGCUggaggCGGCCgCGCUGg -3'
miRNA:   3'- gUGaCGGCGG-GCGAgg---GCCGG-GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 132030 0.67 0.298146
Target:  5'- uGCUcUCGgCCGCggcgggCCgCGGCCUGCCGg -3'
miRNA:   3'- gUGAcGGCgGGCGa-----GG-GCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 131984 0.71 0.181374
Target:  5'- gCGCUGgaggcggcCCGCCgCGC-CgCCGGCgCCGCCGg -3'
miRNA:   3'- -GUGAC--------GGCGG-GCGaG-GGCCG-GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 131862 0.75 0.096956
Target:  5'- aGCUGCgCGCCgUGCUCgCCGGCCgcgcggCGCCGg -3'
miRNA:   3'- gUGACG-GCGG-GCGAG-GGCCGG------GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 131834 0.66 0.383221
Target:  5'- gGCaGCggCGCCCGCg-CCGcGCUCGCCGn -3'
miRNA:   3'- gUGaCG--GCGGGCGagGGC-CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 131653 0.66 0.391001
Target:  5'- uCGC-GCgGCUCaugugcgaGCUCUCGGCgCGCCGg -3'
miRNA:   3'- -GUGaCGgCGGG--------CGAGGGCCGgGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 131602 0.73 0.12084
Target:  5'- aCGCcGCCGCCgCGCUCgCGGCCguaGUCGg -3'
miRNA:   3'- -GUGaCGGCGG-GCGAGgGCCGGg--CGGC- -5'
6483 5' -67.8 NC_001847.1 + 131211 0.68 0.291758
Target:  5'- gCGCUcGCCGCCCGCUgCCaGCgCUGUg- -3'
miRNA:   3'- -GUGA-CGGCGGGCGAgGGcCG-GGCGgc -5'
6483 5' -67.8 NC_001847.1 + 131157 0.7 0.190048
Target:  5'- cCGCgggGCCGCgCGC-CCgGGCCC-CCGg -3'
miRNA:   3'- -GUGa--CGGCGgGCGaGGgCCGGGcGGC- -5'
6483 5' -67.8 NC_001847.1 + 130526 0.72 0.146556
Target:  5'- gGCggGCCGCCCGCg-CCGaGCUgGCCGa -3'
miRNA:   3'- gUGa-CGGCGGGCGagGGC-CGGgCGGC- -5'
6483 5' -67.8 NC_001847.1 + 130286 0.67 0.298146
Target:  5'- gGCUG-UGCCCG-UCCCGGCgccauacauuaUCGCCGg -3'
miRNA:   3'- gUGACgGCGGGCgAGGGCCG-----------GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 130276 0.68 0.273235
Target:  5'- uGCcGCUGCCCGCcgccccccccccUCCCcugcguuuugacGGCCgGCCGa -3'
miRNA:   3'- gUGaCGGCGGGCG------------AGGG------------CCGGgCGGC- -5'
6483 5' -67.8 NC_001847.1 + 130144 0.7 0.208491
Target:  5'- cCGCcGCCGCCgCGCUUugCCGcGgCCGCCGc -3'
miRNA:   3'- -GUGaCGGCGG-GCGAG--GGC-CgGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 130070 1.06 0.000377
Target:  5'- gCACUGCCGCCCGCUCCCGGCCCGCCGu -3'
miRNA:   3'- -GUGACGGCGGGCGAGGGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 129917 0.69 0.255668
Target:  5'- -uUUGCCGCgCGCgCCCcGCCgGCCGc -3'
miRNA:   3'- guGACGGCGgGCGaGGGcCGGgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.