miRNA display CGI


Results 21 - 40 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 5' -67.8 NC_001847.1 + 106045 0.76 0.077584
Target:  5'- gCGC-GCCGCCCGCg-CCGuGCUCGCCGg -3'
miRNA:   3'- -GUGaCGGCGGGCGagGGC-CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 129757 0.76 0.079538
Target:  5'- cCugUGCCGCCgGCcgCUCGGaCCGCCGg -3'
miRNA:   3'- -GugACGGCGGgCGa-GGGCCgGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 57683 0.75 0.085689
Target:  5'- gCGCccGgCGCCCGC-CCCaGCCCGCCGa -3'
miRNA:   3'- -GUGa-CgGCGGGCGaGGGcCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 494 0.75 0.085689
Target:  5'- cCGC-GCCuccgcGCCUGCUgCCGGCCCGCCc -3'
miRNA:   3'- -GUGaCGG-----CGGGCGAgGGCCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 92523 0.75 0.090038
Target:  5'- gCGCUGCCGCCCccCUCCgCGGCggCGCCGu -3'
miRNA:   3'- -GUGACGGCGGGc-GAGG-GCCGg-GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 102352 0.75 0.09229
Target:  5'- aCGC-GCCGUCCGCcCCCGGCCCuCCc -3'
miRNA:   3'- -GUGaCGGCGGGCGaGGGCCGGGcGGc -5'
6483 5' -67.8 NC_001847.1 + 134712 0.75 0.094596
Target:  5'- uGCUGCCGCcgccgCCGC-CCCcGCCCGCCc -3'
miRNA:   3'- gUGACGGCG-----GGCGaGGGcCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 106139 0.75 0.094596
Target:  5'- cCGCUGCCGCCgGCg-CCGGCCU-CCGg -3'
miRNA:   3'- -GUGACGGCGGgCGagGGCCGGGcGGC- -5'
6483 5' -67.8 NC_001847.1 + 100308 0.75 0.094596
Target:  5'- cCGCUGCgCGCUCGcCUCCagcgcccgguCGGCCUGCCGc -3'
miRNA:   3'- -GUGACG-GCGGGC-GAGG----------GCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 13775 0.75 0.094596
Target:  5'- ---cGCCuuGCCCGCUCCCcaccccGCCCGCCGc -3'
miRNA:   3'- gugaCGG--CGGGCGAGGGc-----CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 3326 0.75 0.094596
Target:  5'- cCGCUGCCGCCgGCg-CCGGCCU-CCGg -3'
miRNA:   3'- -GUGACGGCGGgCGagGGCCGGGcGGC- -5'
6483 5' -67.8 NC_001847.1 + 103469 0.75 0.095533
Target:  5'- aCACgGCCGCCCuuagcuccucggggcGCgcgggcUCCgGGCCCGCCGa -3'
miRNA:   3'- -GUGaCGGCGGG---------------CG------AGGgCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 62437 0.75 0.096718
Target:  5'- uGCUGCCGCCCaccgggcggccGCUcucCCCGGCCUcagcaggGCCGg -3'
miRNA:   3'- gUGACGGCGGG-----------CGA---GGGCCGGG-------CGGC- -5'
6483 5' -67.8 NC_001847.1 + 29049 0.75 0.096956
Target:  5'- aGCUGCgCGCCgUGCUCgCCGGCCgcgcggCGCCGg -3'
miRNA:   3'- gUGACG-GCGG-GCGAG-GGCCGG------GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 131862 0.75 0.096956
Target:  5'- aGCUGCgCGCCgUGCUCgCCGGCCgcgcggCGCCGg -3'
miRNA:   3'- gUGACG-GCGG-GCGAG-GGCCGG------GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 88640 0.75 0.096956
Target:  5'- gCGCUGCCGCUgGCaacgCUCGGCCaCGCUGc -3'
miRNA:   3'- -GUGACGGCGGgCGa---GGGCCGG-GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 102231 0.74 0.099372
Target:  5'- uCGCUcCCGUCCGCggcCCCGGCuuccCCGCCGg -3'
miRNA:   3'- -GUGAcGGCGGGCGa--GGGCCG----GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 57559 0.74 0.101845
Target:  5'- gGgUGCCGCCgUGCgagCUCGGCCCGCgCGg -3'
miRNA:   3'- gUgACGGCGG-GCGa--GGGCCGGGCG-GC- -5'
6483 5' -67.8 NC_001847.1 + 92405 0.74 0.10412
Target:  5'- uGCUGuCCGcCCCGCcgCCCGcgcggccGCCCGCCGc -3'
miRNA:   3'- gUGAC-GGC-GGGCGa-GGGC-------CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 115879 0.74 0.104375
Target:  5'- uCGC-GCCGCCgGCcagaaCCGGUCCGCCGg -3'
miRNA:   3'- -GUGaCGGCGGgCGag---GGCCGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.