miRNA display CGI


Results 41 - 60 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 5' -67.8 NC_001847.1 + 76397 0.74 0.109615
Target:  5'- uCGCgGCCGCcgCCGCUgUCGGgCCGCCGg -3'
miRNA:   3'- -GUGaCGGCG--GGCGAgGGCCgGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 93763 0.74 0.109615
Target:  5'- gGCUGCCGgCgGCggCCCGGCC-GCCGc -3'
miRNA:   3'- gUGACGGCgGgCGa-GGGCCGGgCGGC- -5'
6483 5' -67.8 NC_001847.1 + 76283 0.74 0.112326
Target:  5'- aCACUGCCccGCCCcggguagguGCgggCCCGGCCCaaguGCCGa -3'
miRNA:   3'- -GUGACGG--CGGG---------CGa--GGGCCGGG----CGGC- -5'
6483 5' -67.8 NC_001847.1 + 124260 0.74 0.113428
Target:  5'- aGCUGCCGCagGCggucugccugggcgCCCGcGCCCGCCGc -3'
miRNA:   3'- gUGACGGCGggCGa-------------GGGC-CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 109144 0.73 0.12084
Target:  5'- uUugUGCgCGCCUGCgcgCCCGcccGCCCGCCc -3'
miRNA:   3'- -GugACG-GCGGGCGa--GGGC---CGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 6331 0.73 0.12084
Target:  5'- uUugUGCgCGCCUGCgcgCCCGcccGCCCGCCc -3'
miRNA:   3'- -GugACG-GCGGGCGa--GGGC---CGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 31899 0.73 0.12084
Target:  5'- uGCUGCCGCCgccgcCGCcgCCC-GCCCGCCc -3'
miRNA:   3'- gUGACGGCGG-----GCGa-GGGcCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 131602 0.73 0.12084
Target:  5'- aCGCcGCCGCCgCGCUCgCGGCCguaGUCGg -3'
miRNA:   3'- -GUGaCGGCGG-GCGAGgGCCGGg--CGGC- -5'
6483 5' -67.8 NC_001847.1 + 36240 0.73 0.12084
Target:  5'- aCGCgcagGuuGCCgaGCUCCCGGCCUggGCCGc -3'
miRNA:   3'- -GUGa---CggCGGg-CGAGGGCCGGG--CGGC- -5'
6483 5' -67.8 NC_001847.1 + 120453 0.73 0.12351
Target:  5'- aGCUG-CGCCUGCUCcaucgccgcgccgCCGGCCgCGCCGu -3'
miRNA:   3'- gUGACgGCGGGCGAG-------------GGCCGG-GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 76556 0.73 0.12381
Target:  5'- uUACUGCCcacgcaGCCgGCggCCCGGCCC-CCGa -3'
miRNA:   3'- -GUGACGG------CGGgCGa-GGGCCGGGcGGC- -5'
6483 5' -67.8 NC_001847.1 + 52073 0.73 0.12381
Target:  5'- gGCUGCCGUguugCGCUCuUCGGCCgCGCCGc -3'
miRNA:   3'- gUGACGGCGg---GCGAG-GGCCGG-GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 74402 0.73 0.12381
Target:  5'- gCGCgGCCGCCgCGCgcgCgCGGgCCGCCGa -3'
miRNA:   3'- -GUGaCGGCGG-GCGa--GgGCCgGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 10229 0.73 0.126846
Target:  5'- cCGCUGUCGCCCccggcGCgccugCCgGGCCCGCUu -3'
miRNA:   3'- -GUGACGGCGGG-----CGa----GGgCCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 102889 0.73 0.126846
Target:  5'- gGCggGCCcggGCCCGCUCUgGGCuCCGCCc -3'
miRNA:   3'- gUGa-CGG---CGGGCGAGGgCCG-GGCGGc -5'
6483 5' -67.8 NC_001847.1 + 76921 0.73 0.126846
Target:  5'- cCGCUGCCGCCCgGCgggcagauccgCCCGgagcGCCUGCUGg -3'
miRNA:   3'- -GUGACGGCGGG-CGa----------GGGC----CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 99001 0.73 0.126846
Target:  5'- cCGCUGCagGCCCGCgUCCgCGGCgCGCgCGg -3'
miRNA:   3'- -GUGACGg-CGGGCG-AGG-GCCGgGCG-GC- -5'
6483 5' -67.8 NC_001847.1 + 76 0.73 0.126846
Target:  5'- gGCggGCCcggGCCCGCUCUgGGCuCCGCCc -3'
miRNA:   3'- gUGa-CGG---CGGGCGAGGgCCG-GGCGGc -5'
6483 5' -67.8 NC_001847.1 + 122530 0.73 0.126846
Target:  5'- gCAgUGCCGCCCGgaCCCuGCCgGUCGc -3'
miRNA:   3'- -GUgACGGCGGGCgaGGGcCGGgCGGC- -5'
6483 5' -67.8 NC_001847.1 + 59809 0.73 0.126846
Target:  5'- cCACUGCCGCCCGC-CCgGGagCGCgGu -3'
miRNA:   3'- -GUGACGGCGGGCGaGGgCCggGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.