miRNA display CGI


Results 41 - 60 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 5' -67.8 NC_001847.1 + 6367 0.71 0.185666
Target:  5'- -uCUGaCCGCCCGCggCCCccuuuGGCCCuaGCCGc -3'
miRNA:   3'- guGAC-GGCGGGCGa-GGG-----CCGGG--CGGC- -5'
6483 5' -67.8 NC_001847.1 + 7118 0.67 0.324782
Target:  5'- cCACgGCCggGCUC-CUCCUGGCCCGUg- -3'
miRNA:   3'- -GUGaCGG--CGGGcGAGGGCCGGGCGgc -5'
6483 5' -67.8 NC_001847.1 + 7213 0.68 0.279303
Target:  5'- gGCcGCCGCCCGCUCUCuucucucuGcGCUCGCUu -3'
miRNA:   3'- gUGaCGGCGGGCGAGGG--------C-CGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 7832 0.68 0.267274
Target:  5'- gCGCcgGUCGCCgUGUcUCCGGCaCCGCCGg -3'
miRNA:   3'- -GUGa-CGGCGG-GCGaGGGCCG-GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 9340 0.79 0.04577
Target:  5'- aGCUGCaCGCCCGC---CGGCCCGCCGa -3'
miRNA:   3'- gUGACG-GCGGGCGaggGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 9366 0.66 0.383221
Target:  5'- uCGCuUGCCaugGCCCgGUUCCacaGGCCCuCCGa -3'
miRNA:   3'- -GUG-ACGG---CGGG-CGAGGg--CCGGGcGGC- -5'
6483 5' -67.8 NC_001847.1 + 9559 0.66 0.360507
Target:  5'- gCGCUGCagccguccaGCCCGCcgCCCGcGgCCGCg- -3'
miRNA:   3'- -GUGACGg--------CGGGCGa-GGGC-CgGGCGgc -5'
6483 5' -67.8 NC_001847.1 + 9623 0.79 0.046944
Target:  5'- aGCUG-CGCCCGCcgccgCgCCGGCCCGCCGc -3'
miRNA:   3'- gUGACgGCGGGCGa----G-GGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 9686 0.69 0.244478
Target:  5'- aGCUGCCgccgacccGCCCGUcCuCCGGCCaGCCa -3'
miRNA:   3'- gUGACGG--------CGGGCGaG-GGCCGGgCGGc -5'
6483 5' -67.8 NC_001847.1 + 9794 0.7 0.20374
Target:  5'- uCugUcCCGCCCccuuugucccgGCagaccggCCCGGCCCGCCGc -3'
miRNA:   3'- -GugAcGGCGGG-----------CGa------GGGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 9889 0.69 0.223321
Target:  5'- -uCUGCCGCUCGCccgaccgcguggUCUCGGgcCCCGCCc -3'
miRNA:   3'- guGACGGCGGGCG------------AGGGCC--GGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 9894 0.69 0.223321
Target:  5'- uGCgagGCCGUCgCGCUCgUGGCC-GCCGa -3'
miRNA:   3'- gUGa--CGGCGG-GCGAGgGCCGGgCGGC- -5'
6483 5' -67.8 NC_001847.1 + 10145 0.73 0.132807
Target:  5'- gCGCUGCUGCa-GCUCucgcccgagcaggCCGGCCCGCUGc -3'
miRNA:   3'- -GUGACGGCGggCGAG-------------GGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 10229 0.73 0.126846
Target:  5'- cCGCUGUCGCCCccggcGCgccugCCgGGCCCGCUu -3'
miRNA:   3'- -GUGACGGCGGG-----CGa----GGgCCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 10387 0.72 0.146556
Target:  5'- cCGgUGCCGCCCGCgagCCgCGGUccucuccuCCGCCu -3'
miRNA:   3'- -GUgACGGCGGGCGa--GG-GCCG--------GGCGGc -5'
6483 5' -67.8 NC_001847.1 + 10433 0.77 0.066788
Target:  5'- gCGCUGCCGCCCccGCgCCCGGCUCcccugGCCGc -3'
miRNA:   3'- -GUGACGGCGGG--CGaGGGCCGGG-----CGGC- -5'
6483 5' -67.8 NC_001847.1 + 10542 0.67 0.324782
Target:  5'- ---gGCCcggggaCCCGCgCCCGGCCggCGCCGg -3'
miRNA:   3'- gugaCGGc-----GGGCGaGGGCCGG--GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 10591 0.67 0.338749
Target:  5'- ---cGCCGCgCUGCUCUCGGCagaCGCa- -3'
miRNA:   3'- gugaCGGCG-GGCGAGGGCCGg--GCGgc -5'
6483 5' -67.8 NC_001847.1 + 10705 0.68 0.261419
Target:  5'- gGC-GCgGCCCGCg-CCGGCCaagCGCCGc -3'
miRNA:   3'- gUGaCGgCGGGCGagGGCCGG---GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 10903 0.69 0.255668
Target:  5'- aGCUuugGcCCGCUCGCUCggCCGGCCCgaauccucgGCCGg -3'
miRNA:   3'- gUGA---C-GGCGGGCGAG--GGCCGGG---------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.