miRNA display CGI


Results 21 - 40 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 5' -67.8 NC_001847.1 + 2595 0.68 0.285476
Target:  5'- cCGCgGCCGCaCGCgagCCC-GCCgCGCCGg -3'
miRNA:   3'- -GUGaCGGCGgGCGa--GGGcCGG-GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 2695 0.66 0.391001
Target:  5'- ---gGuCCGCCCGCggcgcCCCGGCCC-UCa -3'
miRNA:   3'- gugaC-GGCGGGCGa----GGGCCGGGcGGc -5'
6483 5' -67.8 NC_001847.1 + 2734 0.67 0.324782
Target:  5'- cCACUuCCaCCgGCcCCCGGCCCGgCGc -3'
miRNA:   3'- -GUGAcGGcGGgCGaGGGCCGGGCgGC- -5'
6483 5' -67.8 NC_001847.1 + 2809 0.69 0.255668
Target:  5'- gCGCgGCCGCCaGCcgCgCCGGCaccuCCGCCGg -3'
miRNA:   3'- -GUGaCGGCGGgCGa-G-GGCCG----GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 2995 0.67 0.331712
Target:  5'- gCGCUggaGCCGCgCgCGCUCCaccgcgucgcgGGCCgCGCCGa -3'
miRNA:   3'- -GUGA---CGGCG-G-GCGAGGg----------CCGG-GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 3097 0.72 0.139694
Target:  5'- gGCcGCgGCCgGCaggCCgCGGCCCGCCGc -3'
miRNA:   3'- gUGaCGgCGGgCGa--GG-GCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 3232 0.76 0.077584
Target:  5'- gCGC-GCCGCCCGCg-CCGuGCUCGCCGg -3'
miRNA:   3'- -GUGaCGGCGGGCGagGGC-CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 3326 0.75 0.094596
Target:  5'- cCGCUGCCGCCgGCg-CCGGCCU-CCGg -3'
miRNA:   3'- -GUGACGGCGGgCGagGGCCGGGcGGC- -5'
6483 5' -67.8 NC_001847.1 + 3356 0.69 0.244478
Target:  5'- aCGCUGCCGgCCGCcgcaaUCCgCGcGCCgaGCCGc -3'
miRNA:   3'- -GUGACGGCgGGCG-----AGG-GC-CGGg-CGGC- -5'
6483 5' -67.8 NC_001847.1 + 3702 0.66 0.383221
Target:  5'- aCACgGCCGCggGC-CCCGcGgCCGCCGc -3'
miRNA:   3'- -GUGaCGGCGggCGaGGGC-CgGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 3818 0.66 0.360507
Target:  5'- gGCgGCgGCgCGCUgCCgGGCCaCGCCu -3'
miRNA:   3'- gUGaCGgCGgGCGA-GGgCCGG-GCGGc -5'
6483 5' -67.8 NC_001847.1 + 4035 0.66 0.390219
Target:  5'- uCGCgggGCCGCUuugguucUGgUCCCGGCCCcagucCCGg -3'
miRNA:   3'- -GUGa--CGGCGG-------GCgAGGGCCGGGc----GGC- -5'
6483 5' -67.8 NC_001847.1 + 4156 0.67 0.298146
Target:  5'- uCGCUGCaguccucggGCCCGCUguccucggaCCCGGCgUCGCUGc -3'
miRNA:   3'- -GUGACGg--------CGGGCGA---------GGGCCG-GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 4340 0.72 0.146556
Target:  5'- cCGCgGCCGCcuCCGC-CCCGGCCgCgGCCGc -3'
miRNA:   3'- -GUGaCGGCG--GGCGaGGGCCGG-G-CGGC- -5'
6483 5' -67.8 NC_001847.1 + 4545 0.66 0.367974
Target:  5'- ---gGCC-CCCGCgUCuCCGGCgCCGUCGu -3'
miRNA:   3'- gugaCGGcGGGCG-AG-GGCCG-GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 4608 0.66 0.367974
Target:  5'- cCACaGCUcgGCCaGCUCggcgcgggCGGCCCGCCGg -3'
miRNA:   3'- -GUGaCGG--CGGgCGAGg-------GCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 4927 0.7 0.208491
Target:  5'- ---gGCCGCCgCGCuUCCCGcGCCCuCCGc -3'
miRNA:   3'- gugaCGGCGG-GCG-AGGGC-CGGGcGGC- -5'
6483 5' -67.8 NC_001847.1 + 4953 0.66 0.391001
Target:  5'- ---cGCCGCCCGuCUCUucaGGCCgggCGCCc -3'
miRNA:   3'- gugaCGGCGGGC-GAGGg--CCGG---GCGGc -5'
6483 5' -67.8 NC_001847.1 + 5808 0.67 0.338749
Target:  5'- gCAUgGCCGaacgcccccggcCCCGCgCCCggcaGGCCCGCCu -3'
miRNA:   3'- -GUGaCGGC------------GGGCGaGGG----CCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 6331 0.73 0.12084
Target:  5'- uUugUGCgCGCCUGCgcgCCCGcccGCCCGCCc -3'
miRNA:   3'- -GugACG-GCGGGCGa--GGGC---CGGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.