miRNA display CGI


Results 21 - 40 of 559 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 5' -67.8 NC_001847.1 + 44656 0.66 0.366472
Target:  5'- gGCUGCUGcCCCGCcugcaccgugaCCGGCgaGCCGc -3'
miRNA:   3'- gUGACGGC-GGGCGag---------GGCCGggCGGC- -5'
6483 5' -67.8 NC_001847.1 + 120959 0.66 0.353148
Target:  5'- cCGCcGCCaGCCC-CUCCCGuGCCUuuagcgcgGCCGc -3'
miRNA:   3'- -GUGaCGG-CGGGcGAGGGC-CGGG--------CGGC- -5'
6483 5' -67.8 NC_001847.1 + 107421 0.66 0.367974
Target:  5'- cCACaGCUcgGCCaGCUCggcgcgggCGGCCCGCCGg -3'
miRNA:   3'- -GUGaCGG--CGGgCGAGg-------GCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 39788 0.66 0.360507
Target:  5'- gCGCcGCCuggcCCCGCUCCCcuGGCUgCGCCc -3'
miRNA:   3'- -GUGaCGGc---GGGCGAGGG--CCGG-GCGGc -5'
6483 5' -67.8 NC_001847.1 + 55660 0.66 0.360507
Target:  5'- gACgUGCgCGCCgCGCU-CCGGCUCGCg- -3'
miRNA:   3'- gUG-ACG-GCGG-GCGAgGGCCGGGCGgc -5'
6483 5' -67.8 NC_001847.1 + 82934 0.66 0.360507
Target:  5'- uCGCUGUCGaggCCGCgacCCgCGGCCagGCCGc -3'
miRNA:   3'- -GUGACGGCg--GGCGa--GG-GCCGGg-CGGC- -5'
6483 5' -67.8 NC_001847.1 + 52256 0.66 0.367974
Target:  5'- aCGC-GCCGCUucgUGCUCgCGuGCCCGCgCGc -3'
miRNA:   3'- -GUGaCGGCGG---GCGAGgGC-CGGGCG-GC- -5'
6483 5' -67.8 NC_001847.1 + 38969 0.66 0.367222
Target:  5'- cCGCUGCCgGCCCcgauuacgguuuuGgUUCCGGCCCcgguuCCGg -3'
miRNA:   3'- -GUGACGG-CGGG-------------CgAGGGCCGGGc----GGC- -5'
6483 5' -67.8 NC_001847.1 + 21358 0.66 0.345895
Target:  5'- gCGC-GCCGUCgGCggCUCGGgCCGCCu -3'
miRNA:   3'- -GUGaCGGCGGgCGa-GGGCCgGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 121896 0.66 0.365723
Target:  5'- uGCgaaCCGCCCGCguggcCCCGcuggccaucgcggaGCUCGCCGa -3'
miRNA:   3'- gUGac-GGCGGGCGa----GGGC--------------CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 21876 0.66 0.359767
Target:  5'- gGCUGCgGCgCGCUgCCGaggccgaGCCCGCg- -3'
miRNA:   3'- gUGACGgCGgGCGAgGGC-------CGGGCGgc -5'
6483 5' -67.8 NC_001847.1 + 134682 0.66 0.353148
Target:  5'- uGCUGCCGCcgCCGC-CgCCGcCgCCGCCGc -3'
miRNA:   3'- gUGACGGCG--GGCGaG-GGCcG-GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 84895 0.66 0.367974
Target:  5'- aGCUGCCaCCagCGUUCCaaaGGCCgGCCc -3'
miRNA:   3'- gUGACGGcGG--GCGAGGg--CCGGgCGGc -5'
6483 5' -67.8 NC_001847.1 + 64133 0.66 0.367974
Target:  5'- gCGCgGCCGCCguacUGgaCaugCGGCCCGCCa -3'
miRNA:   3'- -GUGaCGGCGG----GCgaGg--GCCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 82868 0.66 0.360507
Target:  5'- gCACgUGCuCGCCCGUg-CgGGCgCGCCGc -3'
miRNA:   3'- -GUG-ACG-GCGGGCGagGgCCGgGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 87442 0.66 0.345895
Target:  5'- aGCUGCUGCgCgCGCUCaaCGGCcCCGCgGc -3'
miRNA:   3'- gUGACGGCG-G-GCGAGg-GCCG-GGCGgC- -5'
6483 5' -67.8 NC_001847.1 + 95306 0.66 0.364975
Target:  5'- gGCUGgCGCgCGCcacgcaggaagcgCUCgGGCCCGCCGc -3'
miRNA:   3'- gUGACgGCGgGCGa------------GGG-CCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 133532 0.66 0.345895
Target:  5'- uGCUGCCGCggcgcagugcgCCGCgCgCUGGCCCGagCGg -3'
miRNA:   3'- gUGACGGCG-----------GGCGaG-GGCCGGGCg-GC- -5'
6483 5' -67.8 NC_001847.1 + 50100 0.66 0.367974
Target:  5'- gGCUGCCGCgCCGggCggcguagagcgCCGGCUgGCCu -3'
miRNA:   3'- gUGACGGCG-GGCgaG-----------GGCCGGgCGGc -5'
6483 5' -67.8 NC_001847.1 + 101372 0.66 0.345895
Target:  5'- gCGCUugcGCCGCgggggCUGC-CCgCGGCgCCGCCGg -3'
miRNA:   3'- -GUGA---CGGCG-----GGCGaGG-GCCG-GGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.