miRNA display CGI


Results 41 - 60 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 5' -67.8 NC_001847.1 + 11539 0.66 0.375545
Target:  5'- -uUUGCCGCCUugGCUgggcuugcaaagCCCGGUCCgGCCc -3'
miRNA:   3'- guGACGGCGGG--CGA------------GGGCCGGG-CGGc -5'
6483 5' -67.8 NC_001847.1 + 20100 0.66 0.353148
Target:  5'- aGCUGgaGCuCUGC-CCCGGaCUCGCCGc -3'
miRNA:   3'- gUGACggCG-GGCGaGGGCC-GGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 115431 0.66 0.375545
Target:  5'- gGCuUGCCGUCaGCgCCCGGCuCUGCuCGg -3'
miRNA:   3'- gUG-ACGGCGGgCGaGGGCCG-GGCG-GC- -5'
6483 5' -67.8 NC_001847.1 + 70929 0.66 0.375545
Target:  5'- gCGCcGCCGCCCGggcacCCCGaCCCGCg- -3'
miRNA:   3'- -GUGaCGGCGGGCga---GGGCcGGGCGgc -5'
6483 5' -67.8 NC_001847.1 + 14358 0.66 0.391001
Target:  5'- uGCUGCCgacGCUCGCagaugCCaCGGCCgCgGCCGu -3'
miRNA:   3'- gUGACGG---CGGGCGa----GG-GCCGG-G-CGGC- -5'
6483 5' -67.8 NC_001847.1 + 64133 0.66 0.367974
Target:  5'- gCGCgGCCGCCguacUGgaCaugCGGCCCGCCa -3'
miRNA:   3'- -GUGaCGGCGG----GCgaGg--GCCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 38969 0.66 0.367222
Target:  5'- cCGCUGCCgGCCCcgauuacgguuuuGgUUCCGGCCCcgguuCCGg -3'
miRNA:   3'- -GUGACGG-CGGG-------------CgAGGGCCGGGc----GGC- -5'
6483 5' -67.8 NC_001847.1 + 69639 0.66 0.391001
Target:  5'- gCACUGCgCGCgCCGC-CCCacaccgcgccauGGaCCGCCa -3'
miRNA:   3'- -GUGACG-GCG-GGCGaGGG------------CCgGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 58426 0.66 0.382449
Target:  5'- ----cCCGCCCGaccguccUUCCCGGCgCGCCu -3'
miRNA:   3'- gugacGGCGGGC-------GAGGGCCGgGCGGc -5'
6483 5' -67.8 NC_001847.1 + 82934 0.66 0.360507
Target:  5'- uCGCUGUCGaggCCGCgacCCgCGGCCagGCCGc -3'
miRNA:   3'- -GUGACGGCg--GGCGa--GG-GCCGGg-CGGC- -5'
6483 5' -67.8 NC_001847.1 + 9366 0.66 0.383221
Target:  5'- uCGCuUGCCaugGCCCgGUUCCacaGGCCCuCCGa -3'
miRNA:   3'- -GUG-ACGG---CGGG-CGAGGg--CCGGGcGGC- -5'
6483 5' -67.8 NC_001847.1 + 134254 0.66 0.383221
Target:  5'- gGCgGCCGCggCgGC-CCCGGCgcgggCCGCCGc -3'
miRNA:   3'- gUGaCGGCG--GgCGaGGGCCG-----GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 106515 0.66 0.383221
Target:  5'- aCACgGCCGCggGC-CCCGcGgCCGCCGc -3'
miRNA:   3'- -GUGaCGGCGggCGaGGGC-CgGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 44656 0.66 0.366472
Target:  5'- gGCUGCUGcCCCGCcugcaccgugaCCGGCgaGCCGc -3'
miRNA:   3'- gUGACGGC-GGGCGag---------GGCCGggCGGC- -5'
6483 5' -67.8 NC_001847.1 + 55660 0.66 0.360507
Target:  5'- gACgUGCgCGCCgCGCU-CCGGCUCGCg- -3'
miRNA:   3'- gUG-ACG-GCGG-GCGAgGGCCGGGCGgc -5'
6483 5' -67.8 NC_001847.1 + 9559 0.66 0.360507
Target:  5'- gCGCUGCagccguccaGCCCGCcgCCCGcGgCCGCg- -3'
miRNA:   3'- -GUGACGg--------CGGGCGa-GGGC-CgGGCGgc -5'
6483 5' -67.8 NC_001847.1 + 38808 0.66 0.345895
Target:  5'- cCAUUGCCGCCg----CCGGcCCCGCCa -3'
miRNA:   3'- -GUGACGGCGGgcgagGGCC-GGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 63141 0.66 0.353148
Target:  5'- gGCUGUgGCaCCGgaUCCCGGCgCGCa- -3'
miRNA:   3'- gUGACGgCG-GGCg-AGGGCCGgGCGgc -5'
6483 5' -67.8 NC_001847.1 + 106631 0.66 0.360507
Target:  5'- gGCgGCgGCgCGCUgCCgGGCCaCGCCu -3'
miRNA:   3'- gUGaCGgCGgGCGA-GGgCCGG-GCGGc -5'
6483 5' -67.8 NC_001847.1 + 39788 0.66 0.360507
Target:  5'- gCGCcGCCuggcCCCGCUCCCcuGGCUgCGCCc -3'
miRNA:   3'- -GUGaCGGc---GGGCGAGGG--CCGG-GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.