miRNA display CGI


Results 1 - 20 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 135122 0.67 0.417425
Target:  5'- aCCCCcCCGGggucgcagggggcCCGCgcggCGCGGCGcGGAGGG -3'
miRNA:   3'- -GGGGcGGCC-------------GGCG----GCGCCGC-UCUCUC -5'
6484 3' -66.3 NC_001847.1 + 135001 0.7 0.26394
Target:  5'- gCCCC-CCGGCCGgggcccgaggcCCGCGGgCGGGGccGGGg -3'
miRNA:   3'- -GGGGcGGCCGGC-----------GGCGCC-GCUCU--CUC- -5'
6484 3' -66.3 NC_001847.1 + 134938 0.68 0.341716
Target:  5'- gCCC-CCGGgCGCCgGgGGCGGGGGcGGg -3'
miRNA:   3'- gGGGcGGCCgGCGG-CgCCGCUCUC-UC- -5'
6484 3' -66.3 NC_001847.1 + 134896 0.69 0.281937
Target:  5'- gCCCCugggcGCCGGgCGUCGgGGCGcGAGGc -3'
miRNA:   3'- -GGGG-----CGGCCgGCGGCgCCGCuCUCUc -5'
6484 3' -66.3 NC_001847.1 + 134666 0.66 0.434753
Target:  5'- gCCCCGCC-GCCGCCGCuGCu------ -3'
miRNA:   3'- -GGGGCGGcCGGCGGCGcCGcucucuc -5'
6484 3' -66.3 NC_001847.1 + 134350 0.66 0.4628
Target:  5'- cCCCCGCCucgucggacgacgacGaggccggcGCCGCCgGCGGCGGGccggccucgcccuAGGGg -3'
miRNA:   3'- -GGGGCGG---------------C--------CGGCGG-CGCCGCUC-------------UCUC- -5'
6484 3' -66.3 NC_001847.1 + 134267 0.72 0.205853
Target:  5'- gCCCCggcGCgGGCCGCCGCcGCGcguGGAGGu -3'
miRNA:   3'- -GGGG---CGgCCGGCGGCGcCGC---UCUCUc -5'
6484 3' -66.3 NC_001847.1 + 134248 0.67 0.394203
Target:  5'- -gCgGCCGGCgGCCGCGGCGn----- -3'
miRNA:   3'- ggGgCGGCCGgCGGCGCCGCucucuc -5'
6484 3' -66.3 NC_001847.1 + 134178 0.67 0.421513
Target:  5'- gCCCCGCCGGCCcggguGCCgGCGcagucguccccgggcGCGGGcucGGGc -3'
miRNA:   3'- -GGGGCGGCCGG-----CGG-CGC---------------CGCUCu--CUC- -5'
6484 3' -66.3 NC_001847.1 + 134089 0.72 0.200696
Target:  5'- gCCCGgC-GCCGCCGCuugcucuGGCGAGcAGAGg -3'
miRNA:   3'- gGGGCgGcCGGCGGCG-------CCGCUC-UCUC- -5'
6484 3' -66.3 NC_001847.1 + 134049 0.66 0.434753
Target:  5'- gCgCCGCCcGCgGCCGCGGCGcccggcguGGAcuGGGa -3'
miRNA:   3'- -GgGGCGGcCGgCGGCGCCGC--------UCU--CUC- -5'
6484 3' -66.3 NC_001847.1 + 134009 0.68 0.356185
Target:  5'- gCgCGCCGaggcGCCGCCGCuGGUGcuGGAGg -3'
miRNA:   3'- gGgGCGGC----CGGCGGCG-CCGCucUCUC- -5'
6484 3' -66.3 NC_001847.1 + 133961 0.7 0.26394
Target:  5'- -gCUGCCGGCCGCgGCGGUGGc---- -3'
miRNA:   3'- ggGGCGGCCGGCGgCGCCGCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 133668 0.66 0.477615
Target:  5'- gCCgCCGCugCGGCUcuGCCGCGGCGGc---- -3'
miRNA:   3'- -GG-GGCG--GCCGG--CGGCGCCGCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 133523 0.67 0.402116
Target:  5'- gCgCCGCgGuGCUGCCGCGGCGcAGuGc- -3'
miRNA:   3'- -GgGGCGgC-CGGCGGCGCCGC-UCuCuc -5'
6484 3' -66.3 NC_001847.1 + 133218 0.67 0.410129
Target:  5'- gCCCGagUGGCCGCCGCGccGCGGcGGGc -3'
miRNA:   3'- gGGGCg-GCCGGCGGCGC--CGCUcUCUc -5'
6484 3' -66.3 NC_001847.1 + 133170 0.67 0.40132
Target:  5'- gCCCggggaggCGCUGGCggCGCCGCccGGCGAGGacGAGc -3'
miRNA:   3'- -GGG-------GCGGCCG--GCGGCG--CCGCUCU--CUC- -5'
6484 3' -66.3 NC_001847.1 + 133067 0.68 0.355451
Target:  5'- gCCCCGCgGGgcgcucgccgccaCCGCUGCGGCGGc---- -3'
miRNA:   3'- -GGGGCGgCC-------------GGCGGCGCCGCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 132886 0.7 0.258151
Target:  5'- uUCCCGagGGCCGCCGCGucaccUGGGAGAc -3'
miRNA:   3'- -GGGGCggCCGGCGGCGCc----GCUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 132863 0.66 0.456771
Target:  5'- gCCCCGCCGccgacggcggcuuCCGCCGCGuGCcgcccGGGGAc -3'
miRNA:   3'- -GGGGCGGCc------------GGCGGCGC-CGc----UCUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.