miRNA display CGI


Results 1 - 20 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 57105 0.74 0.148197
Target:  5'- -aCCGCCGcGCCGCCGCGcGCauguuGGGGGAc -3'
miRNA:   3'- ggGGCGGC-CGGCGGCGC-CG-----CUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 2582 0.76 0.110641
Target:  5'- gCCUGCgCGGCCGCCGCGGCcgcacgcGAGcccgccgcgccGGAGg -3'
miRNA:   3'- gGGGCG-GCCGGCGGCGCCG-------CUC-----------UCUC- -5'
6484 3' -66.3 NC_001847.1 + 15984 0.76 0.110641
Target:  5'- gCCCCGCCgccccgcGGCgGCCGCGGCGccGAcGAGc -3'
miRNA:   3'- -GGGGCGG-------CCGgCGGCGCCGCu-CU-CUC- -5'
6484 3' -66.3 NC_001847.1 + 84224 0.76 0.110912
Target:  5'- gCCCUGaCGGCCgggGCCGCcGCGGGGGAGg -3'
miRNA:   3'- -GGGGCgGCCGG---CGGCGcCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 100652 0.75 0.113649
Target:  5'- gCCaggGCCGcGCUGCUGCGGCGGGGGGu -3'
miRNA:   3'- gGGg--CGGC-CGGCGGCGCCGCUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 90546 0.75 0.11645
Target:  5'- gCCCUGgCGGCCcucGCCGCGcGCGAGGGcGa -3'
miRNA:   3'- -GGGGCgGCCGG---CGGCGC-CGCUCUCuC- -5'
6484 3' -66.3 NC_001847.1 + 82455 0.75 0.119315
Target:  5'- aCCCCGCgcaCGGCCGCgUGCGGCGugccguGGGAc -3'
miRNA:   3'- -GGGGCG---GCCGGCG-GCGCCGCu-----CUCUc -5'
6484 3' -66.3 NC_001847.1 + 34459 0.74 0.141273
Target:  5'- gCCgCGgUGGCCGCCgGCGGCGAG-GAu -3'
miRNA:   3'- -GGgGCgGCCGGCGG-CGCCGCUCuCUc -5'
6484 3' -66.3 NC_001847.1 + 85555 0.74 0.141273
Target:  5'- cUCCCGCUGcgcccaggcGCCGCCGuCGGCcGAGAGGu -3'
miRNA:   3'- -GGGGCGGC---------CGGCGGC-GCCG-CUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 132784 0.76 0.108236
Target:  5'- gCCgCCGCCgacgcggccgGGCCGgCGCGGCGGGAGc- -3'
miRNA:   3'- -GG-GGCGG----------CCGGCgGCGCCGCUCUCuc -5'
6484 3' -66.3 NC_001847.1 + 103722 0.76 0.095743
Target:  5'- -gCCGCCGGCCGCCGCccgccGGCGccGGGAa -3'
miRNA:   3'- ggGGCGGCCGGCGGCG-----CCGCu-CUCUc -5'
6484 3' -66.3 NC_001847.1 + 97770 0.76 0.095743
Target:  5'- -gCCGCCGGCCGCCaGCa--GAGAGAGg -3'
miRNA:   3'- ggGGCGGCCGGCGG-CGccgCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 132716 0.91 0.008131
Target:  5'- gCCCUGCCGGCCGCCGCGGgggccccuCGGGGGAGg -3'
miRNA:   3'- -GGGGCGGCCGGCGGCGCC--------GCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 106746 0.85 0.021058
Target:  5'- gCCCgCGCUGG-CGCCGCGGCGGGGGGGg -3'
miRNA:   3'- -GGG-GCGGCCgGCGGCGCCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 12617 0.82 0.0373
Target:  5'- cCCCCGCuccucaacauggaggCGGCCGCUGCGGCugcggGGGAGAGg -3'
miRNA:   3'- -GGGGCG---------------GCCGGCGGCGCCG-----CUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 64452 0.81 0.045227
Target:  5'- cCCCCGCC-GCCGcCCGCGGCGGcgcGGGGGg -3'
miRNA:   3'- -GGGGCGGcCGGC-GGCGCCGCU---CUCUC- -5'
6484 3' -66.3 NC_001847.1 + 120076 0.81 0.047572
Target:  5'- cUCCUGCCGaGCCGCgCGgGGCGGGAGAu -3'
miRNA:   3'- -GGGGCGGC-CGGCG-GCgCCGCUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 34131 0.79 0.067642
Target:  5'- gCCUGCCgcgguGGCCGCCGCGGCGAGcgcgcugcgcGAGg -3'
miRNA:   3'- gGGGCGG-----CCGGCGGCGCCGCUCu---------CUC- -5'
6484 3' -66.3 NC_001847.1 + 76850 0.77 0.091139
Target:  5'- gCCUGCCGGCCGCCGCcgucgccgcGGcCGAGcacauGGAGg -3'
miRNA:   3'- gGGGCGGCCGGCGGCG---------CC-GCUC-----UCUC- -5'
6484 3' -66.3 NC_001847.1 + 108015 0.77 0.091139
Target:  5'- cCCUCGCCGGCucucuCGCCGCGGCGGccGGcGGGg -3'
miRNA:   3'- -GGGGCGGCCG-----GCGGCGCCGCU--CU-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.