miRNA display CGI


Results 1 - 20 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 5156 0.66 0.481134
Target:  5'- cCCaCCGCgCGuGCCuuuuuuuuguuuuaCCGCGGCGcGGGAGa -3'
miRNA:   3'- -GG-GGCG-GC-CGGc-------------GGCGCCGCuCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 123570 0.66 0.468872
Target:  5'- ---gGCCggGGCCGCCGCGaGCGGGGc-- -3'
miRNA:   3'- ggggCGG--CCGGCGGCGC-CGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 31537 0.66 0.4628
Target:  5'- cCCCCGCCucgucggacgacgacGaggccggcGCCGCCgGCGGCGGGccggccucgcccuAGGGg -3'
miRNA:   3'- -GGGGCGG---------------C--------CGGCGG-CGCCGCUC-------------UCUC- -5'
6484 3' -66.3 NC_001847.1 + 27116 1.08 0.000449
Target:  5'- gCCCCGCCGGCCGCCGCGGCGAGAGAGc -3'
miRNA:   3'- -GGGGCGGCCGGCGGCGCCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 30855 0.66 0.477615
Target:  5'- gCCgCCGCugCGGCUcuGCCGCGGCGGc---- -3'
miRNA:   3'- -GG-GGCG--GCCGG--CGGCGCCGCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 95770 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 95716 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 95689 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 40968 0.66 0.476737
Target:  5'- gCCCGCgcgaGGCgGCCGCGcccagcagccgccGCGAGAu-- -3'
miRNA:   3'- gGGGCGg---CCGgCGGCGC-------------CGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 75227 0.66 0.468872
Target:  5'- uUCCGCCGGCucuCGCCGCGcGCGc----- -3'
miRNA:   3'- gGGGCGGCCG---GCGGCGC-CGCucucuc -5'
6484 3' -66.3 NC_001847.1 + 122509 0.66 0.472359
Target:  5'- cCCCCGCa-GCCGCaGCGGCcgccuccauguugagGAGcGGGGg -3'
miRNA:   3'- -GGGGCGgcCGGCGgCGCCG---------------CUC-UCUC- -5'
6484 3' -66.3 NC_001847.1 + 81222 0.66 0.476737
Target:  5'- -gCCGCCGucGCCGUCGCcuccgGGCGGGGccgucgcGAGg -3'
miRNA:   3'- ggGGCGGC--CGGCGGCG-----CCGCUCU-------CUC- -5'
6484 3' -66.3 NC_001847.1 + 22599 0.66 0.477615
Target:  5'- gCCCGcCCGGUCG-CGUGGCaAGcGAGu -3'
miRNA:   3'- gGGGC-GGCCGGCgGCGCCGcUCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 39754 0.66 0.468872
Target:  5'- uCCCCggcGCCGGCCucagaGCCGgCGGCGcGGu-- -3'
miRNA:   3'- -GGGG---CGGCCGG-----CGGC-GCCGCuCUcuc -5'
6484 3' -66.3 NC_001847.1 + 65855 0.66 0.477615
Target:  5'- gUCCGCCcGCaCGCCGCGuaGAG-GAa -3'
miRNA:   3'- gGGGCGGcCG-GCGGCGCcgCUCuCUc -5'
6484 3' -66.3 NC_001847.1 + 95662 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 116197 0.66 0.468872
Target:  5'- uCgCCGCCacggacGCCGCgGCGGCGcuGGAa -3'
miRNA:   3'- -GgGGCGGc-----CGGCGgCGCCGCucUCUc -5'
6484 3' -66.3 NC_001847.1 + 61869 0.66 0.468872
Target:  5'- gCCUGCCGGCgC-CCGCggggguugcacGGCGAGcGGAa -3'
miRNA:   3'- gGGGCGGCCG-GcGGCG-----------CCGCUC-UCUc -5'
6484 3' -66.3 NC_001847.1 + 53954 0.66 0.477615
Target:  5'- gCgCGCCGGCuggCGCCGCcGCGAGcccuccGAGc -3'
miRNA:   3'- gGgGCGGCCG---GCGGCGcCGCUCu-----CUC- -5'
6484 3' -66.3 NC_001847.1 + 95743 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.