miRNA display CGI


Results 21 - 40 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 58158 0.66 0.460211
Target:  5'- uCCUCGaggCGGgCGaCCGCGGCGGGGu-- -3'
miRNA:   3'- -GGGGCg--GCCgGC-GGCGCCGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 31537 0.66 0.4628
Target:  5'- cCCCCGCCucgucggacgacgacGaggccggcGCCGCCgGCGGCGGGccggccucgcccuAGGGg -3'
miRNA:   3'- -GGGGCGG---------------C--------CGGCGG-CGCCGCUC-------------UCUC- -5'
6484 3' -66.3 NC_001847.1 + 81222 0.66 0.476737
Target:  5'- -gCCGCCGucGCCGUCGCcuccgGGCGGGGccgucgcGAGg -3'
miRNA:   3'- ggGGCGGC--CGGCGGCG-----CCGCUCU-------CUC- -5'
6484 3' -66.3 NC_001847.1 + 53954 0.66 0.477615
Target:  5'- gCgCGCCGGCuggCGCCGCcGCGAGcccuccGAGc -3'
miRNA:   3'- gGgGCGGCCG---GCGGCGcCGCUCu-----CUC- -5'
6484 3' -66.3 NC_001847.1 + 61170 0.66 0.434753
Target:  5'- cCCUCGCacuucuggagggCGGCUagGUCGCcGUGAGAGAGg -3'
miRNA:   3'- -GGGGCG------------GCCGG--CGGCGcCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 132527 0.66 0.451636
Target:  5'- gUCCCGCCGaagcaccuCCGgCGCGGCGGGc--- -3'
miRNA:   3'- -GGGGCGGCc-------GGCgGCGCCGCUCucuc -5'
6484 3' -66.3 NC_001847.1 + 123570 0.66 0.468872
Target:  5'- ---gGCCggGGCCGCCGCGaGCGGGGc-- -3'
miRNA:   3'- ggggCGG--CCGGCGGCGC-CGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 65855 0.66 0.477615
Target:  5'- gUCCGCCcGCaCGCCGCGuaGAG-GAa -3'
miRNA:   3'- gGGGCGGcCG-GCGGCGCcgCUCuCUc -5'
6484 3' -66.3 NC_001847.1 + 46338 0.66 0.451636
Target:  5'- gCCCGCgGgGCCGCgucgGCGGCaucGGGGGGc -3'
miRNA:   3'- gGGGCGgC-CGGCGg---CGCCGc--UCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 22599 0.66 0.477615
Target:  5'- gCCCGcCCGGUCG-CGUGGCaAGcGAGu -3'
miRNA:   3'- gGGGC-GGCCGGCgGCGCCGcUCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 61869 0.66 0.468872
Target:  5'- gCCUGCCGGCgC-CCGCggggguugcacGGCGAGcGGAa -3'
miRNA:   3'- gGGGCGGCCG-GcGGCG-----------CCGCUC-UCUc -5'
6484 3' -66.3 NC_001847.1 + 39398 0.66 0.460211
Target:  5'- gCCggCGCCGGCCggGCUccuccgaaaGCaGCGAGGGGGg -3'
miRNA:   3'- gGG--GCGGCCGG--CGG---------CGcCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 39754 0.66 0.468872
Target:  5'- uCCCCggcGCCGGCCucagaGCCGgCGGCGcGGu-- -3'
miRNA:   3'- -GGGG---CGGCCGG-----CGGC-GCCGCuCUcuc -5'
6484 3' -66.3 NC_001847.1 + 40968 0.66 0.476737
Target:  5'- gCCCGCgcgaGGCgGCCGCGcccagcagccgccGCGAGAu-- -3'
miRNA:   3'- gGGGCGg---CCGgCGGCGC-------------CGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 95716 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 30855 0.66 0.477615
Target:  5'- gCCgCCGCugCGGCUcuGCCGCGGCGGc---- -3'
miRNA:   3'- -GG-GGCG--GCCGG--CGGCGCCGCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 58228 0.66 0.434753
Target:  5'- gCCCGCCGGgCGgCaGCGGCGGc---- -3'
miRNA:   3'- gGGGCGGCCgGCgG-CGCCGCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 32482 0.66 0.434753
Target:  5'- cCCCCGCCcucgcGGCCGCuCcCGGCGcgucaccccGAGAc -3'
miRNA:   3'- -GGGGCGG-----CCGGCG-GcGCCGCu--------CUCUc -5'
6484 3' -66.3 NC_001847.1 + 85936 0.66 0.443149
Target:  5'- gCCCGCgGGCC-CCG-GcGCGAGGGc- -3'
miRNA:   3'- gGGGCGgCCGGcGGCgC-CGCUCUCuc -5'
6484 3' -66.3 NC_001847.1 + 115963 0.66 0.451636
Target:  5'- aCCCCGCCc-CCGCCGUGcuGCGcGGGGu -3'
miRNA:   3'- -GGGGCGGccGGCGGCGC--CGCuCUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.