miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 5' -52.6 NC_001847.1 + 116888 0.66 0.960369
Target:  5'- ----gCCGCGCCGCGGUc--GCGGc- -3'
miRNA:   3'- aagagGGCGCGGCGCCAuuuUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 74508 0.67 0.933275
Target:  5'- ---gCCUGCGCCGCGcgcuGGACGAGAc -3'
miRNA:   3'- aagaGGGCGCGGCGCcau-UUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 90255 0.67 0.927844
Target:  5'- --gUCCCGCaGCaCGUGGU-AGGCGAAAa -3'
miRNA:   3'- aagAGGGCG-CG-GCGCCAuUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 27153 1.04 0.00884
Target:  5'- cUUCUCCCGCGCCGCGGUAAAACAAAAa -3'
miRNA:   3'- -AAGAGGGCGCGGCGCCAUUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 82849 0.66 0.960369
Target:  5'- ---gCCCGCGcCCGCGGUcgcgcacACAAAGc -3'
miRNA:   3'- aagaGGGCGC-GGCGCCAuuu----UGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 43133 0.66 0.960369
Target:  5'- -gCUCUCGCgGCUGUGG--GAGCAGGAa -3'
miRNA:   3'- aaGAGGGCG-CGGCGCCauUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 111068 0.66 0.956493
Target:  5'- -cCUCUCGCuGCCGCGGgccuGGGCc--- -3'
miRNA:   3'- aaGAGGGCG-CGGCGCCau--UUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 131748 0.66 0.956493
Target:  5'- cUCUCCCGCuGCUuGCGG-AGGGCu--- -3'
miRNA:   3'- aAGAGGGCG-CGG-CGCCaUUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 21749 0.66 0.956493
Target:  5'- ---gCCCGCGCgCGCGGggGGGCc--- -3'
miRNA:   3'- aagaGGGCGCG-GCGCCauUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 116271 0.66 0.943344
Target:  5'- -aCUCUgGCGCCGCucGGcGAGGCAGc- -3'
miRNA:   3'- aaGAGGgCGCGGCG--CCaUUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 14298 0.66 0.952366
Target:  5'- cUCUCCgGCGUCGCGGc--------- -3'
miRNA:   3'- aAGAGGgCGCGGCGCCauuuuguuuu -5'
6484 5' -52.6 NC_001847.1 + 35895 0.66 0.956493
Target:  5'- -aCUCCCGCGCCG-GcUGcGACAAc- -3'
miRNA:   3'- aaGAGGGCGCGGCgCcAUuUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 75866 0.66 0.960369
Target:  5'- gUUUCCCGcCGCCGgGGcucgAGAGCcAAAu -3'
miRNA:   3'- aAGAGGGC-GCGGCgCCa---UUUUGuUUU- -5'
6484 5' -52.6 NC_001847.1 + 113854 0.66 0.947984
Target:  5'- gUC-CCCGUggauGCCGCGGUccgcuACAAAGa -3'
miRNA:   3'- aAGaGGGCG----CGGCGCCAuuu--UGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 116475 0.66 0.960369
Target:  5'- gUUCUgCUCaGCGUCGCGGgcGGGCAc-- -3'
miRNA:   3'- -AAGA-GGG-CGCGGCGCCauUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 93147 0.66 0.956493
Target:  5'- cUUCgUUCCGCGCCGacgcagcgcuCGGcGAGACAGAc -3'
miRNA:   3'- -AAG-AGGGCGCGGC----------GCCaUUUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 35459 0.66 0.947984
Target:  5'- ---gCCCGCGCCGCGcgcc-GCAAAGc -3'
miRNA:   3'- aagaGGGCGCGGCGCcauuuUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 103332 0.67 0.930048
Target:  5'- cUCUgccCCCGCGCCGCccaccgccacggccGUAAGGCAGGc -3'
miRNA:   3'- aAGA---GGGCGCGGCGc-------------CAUUUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 97335 0.66 0.960369
Target:  5'- gUCgcgCCCGCccgGCCGCGuGUcAAACAGc- -3'
miRNA:   3'- aAGa--GGGCG---CGGCGC-CAuUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 101204 0.66 0.960369
Target:  5'- gUUCUCCaGCGCCucGCGGUAccGGcCGAAGa -3'
miRNA:   3'- -AAGAGGgCGCGG--CGCCAU--UUuGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.