miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 897 0.74 0.096901
Target:  5'- ---gGGGCcgccgcGGCCgCCGGCCGccGCCCGCCg -3'
miRNA:   3'- cagaCCCG------CCGG-GGCCGGC--CGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 103710 0.74 0.096901
Target:  5'- ---gGGGCcgccgcGGCCgCCGGCCGccGCCCGCCg -3'
miRNA:   3'- cagaCCCG------CCGG-GGCCGGC--CGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 25320 0.74 0.099309
Target:  5'- ---aGGGCGcGCCCaaaGGCCGGCUC-CCg -3'
miRNA:   3'- cagaCCCGC-CGGGg--CCGGCCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 11519 0.74 0.106877
Target:  5'- ---aGGGCGccGCCCCGGCCGaGUuuGCCg -3'
miRNA:   3'- cagaCCCGC--CGGGGCCGGC-CGggUGG- -5'
6485 5' -68.2 NC_001847.1 + 45844 0.74 0.106877
Target:  5'- -gCUGGGCGGCa-CGGCCgaGGCCUcgGCCg -3'
miRNA:   3'- caGACCCGCCGggGCCGG--CCGGG--UGG- -5'
6485 5' -68.2 NC_001847.1 + 34082 0.73 0.112219
Target:  5'- ---cGcGGCGGCCCCggGGCCGGCCuCGgCg -3'
miRNA:   3'- cagaC-CCGCCGGGG--CCGGCCGG-GUgG- -5'
6485 5' -68.2 NC_001847.1 + 26495 0.73 0.113317
Target:  5'- cGUCc--GCGGCCCCGGCCacuucugcagcgucGCCCGCCg -3'
miRNA:   3'- -CAGaccCGCCGGGGCCGGc-------------CGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 22373 0.73 0.113317
Target:  5'- -aCUGGGacgaGGCCCCcgcggGGCCGGggucgcgacggacaaCCCGCCa -3'
miRNA:   3'- caGACCCg---CCGGGG-----CCGGCC---------------GGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 15407 0.73 0.117811
Target:  5'- -gCUGGGCGGCCCUGGagcgCGGCaCgGCg -3'
miRNA:   3'- caGACCCGCCGGGGCCg---GCCG-GgUGg -5'
6485 5' -68.2 NC_001847.1 + 54589 0.73 0.117811
Target:  5'- -gCUGGGCGGCgCUGGCgGcGCgCGCCc -3'
miRNA:   3'- caGACCCGCCGgGGCCGgC-CGgGUGG- -5'
6485 5' -68.2 NC_001847.1 + 134912 0.73 0.117811
Target:  5'- cGUCgGGGCgcgaGGCCCgGGCUcgGGCCC-CCg -3'
miRNA:   3'- -CAGaCCCG----CCGGGgCCGG--CCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 32099 0.73 0.117811
Target:  5'- cGUCgGGGCgcgaGGCCCgGGCUcgGGCCC-CCg -3'
miRNA:   3'- -CAGaCCCG----CCGGGgCCGG--CCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 69268 0.73 0.117811
Target:  5'- --aUGGGCGGCCCCcacGUCaGCUCGCCg -3'
miRNA:   3'- cagACCCGCCGGGGc--CGGcCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 34296 0.73 0.117811
Target:  5'- ---cGGGCcggcgcuccGGCCCUGGCCGGagCCGCCc -3'
miRNA:   3'- cagaCCCG---------CCGGGGCCGGCCg-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 71075 0.73 0.120703
Target:  5'- -gCU-GGCGGCgCUCGGCCGGCgCgGCCa -3'
miRNA:   3'- caGAcCCGCCG-GGGCCGGCCG-GgUGG- -5'
6485 5' -68.2 NC_001847.1 + 112325 0.73 0.123661
Target:  5'- cUCggcggGGaGCGGCCgCC-GCCGGCCCGCa -3'
miRNA:   3'- cAGa----CC-CGCCGG-GGcCGGCCGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 128455 0.73 0.126687
Target:  5'- -cCUGcGCGcGCgCCCGGCCGG-CCGCCg -3'
miRNA:   3'- caGACcCGC-CG-GGGCCGGCCgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 52583 0.73 0.126687
Target:  5'- cUCgagGcGGCGGCCgaGGCCGaGCCCGCg -3'
miRNA:   3'- cAGa--C-CCGCCGGggCCGGC-CGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 16235 0.73 0.126687
Target:  5'- cGUCccGGccuCGGCCCCGGCCccGGCCCcgGCCc -3'
miRNA:   3'- -CAGa-CCc--GCCGGGGCCGG--CCGGG--UGG- -5'
6485 5' -68.2 NC_001847.1 + 71707 0.73 0.129781
Target:  5'- cGUCUGcGCGGUgC--GCCGGCCCGCCg -3'
miRNA:   3'- -CAGACcCGCCGgGgcCGGCCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.