miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 4341 0.66 0.374193
Target:  5'- ---cGcGGCcgccuccGCCCCGGCCGcGgCCGCCu -3'
miRNA:   3'- cagaC-CCGc------CGGGGCCGGC-CgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 4630 0.66 0.359232
Target:  5'- ---cGGGCGGCCC--GCCGGCgCUcgcgcGCCu -3'
miRNA:   3'- cagaCCCGCCGGGgcCGGCCG-GG-----UGG- -5'
6485 5' -68.2 NC_001847.1 + 5810 0.67 0.303653
Target:  5'- --aUGGccgaacgccccCGGCCCCGcGCCcggcaGGCCCGCCu -3'
miRNA:   3'- cagACCc----------GCCGGGGC-CGG-----CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 5932 0.69 0.217721
Target:  5'- --aUGGGCGGCggacgaCgGGCCcGCCCGCUg -3'
miRNA:   3'- cagACCCGCCGg-----GgCCGGcCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 6365 0.66 0.374193
Target:  5'- gGUCUGaccgcccGCGGCCCCcuUUGGCCCuaGCCg -3'
miRNA:   3'- -CAGACc------CGCCGGGGccGGCCGGG--UGG- -5'
6485 5' -68.2 NC_001847.1 + 6857 0.69 0.217721
Target:  5'- ---gGGGCGGCgCUuGCUuuGGCCCGCCu -3'
miRNA:   3'- cagaCCCGCCGgGGcCGG--CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 8344 0.71 0.153458
Target:  5'- uUCUGGGacuGGCgCCaaGCCGGCCCAUg -3'
miRNA:   3'- cAGACCCg--CCG-GGgcCGGCCGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 8479 0.68 0.266473
Target:  5'- ---gGGGCGGCgCUCGGCCgggggcggGGCCCcuuacguggGCCc -3'
miRNA:   3'- cagaCCCGCCG-GGGCCGG--------CCGGG---------UGG- -5'
6485 5' -68.2 NC_001847.1 + 9624 0.71 0.168689
Target:  5'- -gCUGcGCccGCCgCCGcGCCGGCCCGCCg -3'
miRNA:   3'- caGACcCGc-CGG-GGC-CGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 9727 0.68 0.278441
Target:  5'- gGUCcuccGGCGGCgCCGGggcagucgccgUCGGUCCACCu -3'
miRNA:   3'- -CAGac--CCGCCGgGGCC-----------GGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 9807 0.7 0.198615
Target:  5'- cUUUGuccCGGCagaCCGGcCCGGCCCGCCg -3'
miRNA:   3'- cAGACcc-GCCGg--GGCC-GGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 10137 0.68 0.28273
Target:  5'- -gCUGggaGGCGcugcugcagcucucGCCCgagcaGGCCGGCCCGCUg -3'
miRNA:   3'- caGAC---CCGC--------------CGGGg----CCGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 10570 0.66 0.359232
Target:  5'- ---cGGGCccGGCgCCGG-CGGCCCcCCc -3'
miRNA:   3'- cagaCCCG--CCGgGGCCgGCCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 10602 0.7 0.20325
Target:  5'- ---cGGGcCGGCgCCGGcCCGcGCCCugCu -3'
miRNA:   3'- cagaCCC-GCCGgGGCC-GGC-CGGGugG- -5'
6485 5' -68.2 NC_001847.1 + 10694 0.71 0.160911
Target:  5'- gGUCgcgcccGGGCGcGgCCCGcGCCGGCCaagCGCCg -3'
miRNA:   3'- -CAGa-----CCCGC-CgGGGC-CGGCCGG---GUGG- -5'
6485 5' -68.2 NC_001847.1 + 10918 0.68 0.260071
Target:  5'- -gCUcGGcCGGCCCgaauccuCGGCCGGCCCGa- -3'
miRNA:   3'- caGAcCC-GCCGGG-------GCCGGCCGGGUgg -5'
6485 5' -68.2 NC_001847.1 + 11308 0.67 0.330583
Target:  5'- --aUGGGCGcGCCCgccgaGGCCGGCgggcggcuggCGCCg -3'
miRNA:   3'- cagACCCGC-CGGGg----CCGGCCGg---------GUGG- -5'
6485 5' -68.2 NC_001847.1 + 11519 0.74 0.106877
Target:  5'- ---aGGGCGccGCCCCGGCCGaGUuuGCCg -3'
miRNA:   3'- cagaCCCGC--CGGGGCCGGC-CGggUGG- -5'
6485 5' -68.2 NC_001847.1 + 11551 0.67 0.297189
Target:  5'- -gCUGGGCuuGCaaagCCCGGuCCGGCcCCGCUn -3'
miRNA:   3'- caGACCCGc-CG----GGGCC-GGCCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 11583 0.72 0.146319
Target:  5'- ---cGcGGCGGCCCCGGCCcaaGCCCcguucgcagcgGCCu -3'
miRNA:   3'- cagaC-CCGCCGGGGCCGGc--CGGG-----------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.