miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 131720 0.66 0.365912
Target:  5'- -cCUGGGCugcgccuGGCCCCccgGGCUGcucuCCCGCUg -3'
miRNA:   3'- caGACCCG-------CCGGGG---CCGGCc---GGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 130954 0.67 0.310224
Target:  5'- -cCUGcGcGCGGCCCacgggcgcgCGGCCcaaaacaaGGCCCGCUc -3'
miRNA:   3'- caGAC-C-CGCCGGG---------GCCGG--------CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 130784 0.66 0.36666
Target:  5'- gGUCgcggugGaGGCGGCCgCGGCCGGggcggaggCgGCCg -3'
miRNA:   3'- -CAGa-----C-CCGCCGGgGCCGGCCg-------GgUGG- -5'
6485 5' -68.2 NC_001847.1 + 130267 0.67 0.290833
Target:  5'- ---cGGG-GGCCCU-GCCGcuGCCCGCCg -3'
miRNA:   3'- cagaCCCgCCGGGGcCGGC--CGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 129804 0.66 0.35191
Target:  5'- ---cGGcCGGCUagccagcuccgaCCGGCCGGCCUucuGCCa -3'
miRNA:   3'- cagaCCcGCCGG------------GGCCGGCCGGG---UGG- -5'
6485 5' -68.2 NC_001847.1 + 129462 1.09 0.000222
Target:  5'- gGUCUGGGCGGCCCCGGCCGGCCCACCu -3'
miRNA:   3'- -CAGACCCGCCGGGGCCGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 129301 0.69 0.217225
Target:  5'- ---gGGGCGGgCCUggugcaaGGCgGGCCUGCCg -3'
miRNA:   3'- cagaCCCGCCgGGG-------CCGgCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 129210 0.66 0.374193
Target:  5'- ---cGGGCGGgCCCGucguccGCCG-CCCAUCc -3'
miRNA:   3'- cagaCCCGCCgGGGC------CGGCcGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 128455 0.73 0.126687
Target:  5'- -cCUGcGCGcGCgCCCGGCCGG-CCGCCg -3'
miRNA:   3'- caGACcCGC-CG-GGGCCGGCCgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 128167 0.75 0.083574
Target:  5'- -gCUGGGCGGCCcgCCGGgCGGaagcgCCGCCg -3'
miRNA:   3'- caGACCCGCCGG--GGCCgGCCg----GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 127881 0.67 0.310224
Target:  5'- cGUCUc-GCGuGCCCCcGCCGcGCCCGCa -3'
miRNA:   3'- -CAGAccCGC-CGGGGcCGGC-CGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 127394 0.7 0.20325
Target:  5'- cGUC-GGGCuuGCCCUGGCCGccgccuccgcGCCCGCg -3'
miRNA:   3'- -CAGaCCCGc-CGGGGCCGGC----------CGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 127277 0.66 0.337585
Target:  5'- uUUUGuGGCGGCCgCCucuGCaGGCgCCACCg -3'
miRNA:   3'- cAGAC-CCGCCGG-GGc--CGgCCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 127272 0.66 0.36666
Target:  5'- gGUCU-GGCGGCCCaaa-CGGCCCGa- -3'
miRNA:   3'- -CAGAcCCGCCGGGgccgGCCGGGUgg -5'
6485 5' -68.2 NC_001847.1 + 127088 0.66 0.374193
Target:  5'- cUCUGcGcGCgGGCCgCgCGGCUuugGGUCCACCg -3'
miRNA:   3'- cAGAC-C-CG-CCGG-G-GCCGG---CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 126986 0.67 0.290833
Target:  5'- -gCUGGaggccagccaaGCaGCCCCGcgaggcucGUCGGCCCGCCc -3'
miRNA:   3'- caGACC-----------CGcCGGGGC--------CGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 126655 0.69 0.217721
Target:  5'- cGUaagGGGCcccGcCCCCGGCCGaGCgCCGCCc -3'
miRNA:   3'- -CAga-CCCGc--C-GGGGCCGGC-CG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 126513 0.69 0.222231
Target:  5'- uGUCUuugaguaGGGCGcuccuccccccGcCCCCGGCCGaGCgCCGCCc -3'
miRNA:   3'- -CAGA-------CCCGC-----------C-GGGGCCGGC-CG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 126501 0.68 0.260648
Target:  5'- cGUCUGGGC-GCCCgaguccgcagCGGCCGcuCCC-CCg -3'
miRNA:   3'- -CAGACCCGcCGGG----------GCCGGCc-GGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 125394 0.7 0.18526
Target:  5'- ---cGGGC-GCCCCggGGCagGGCCCGCCc -3'
miRNA:   3'- cagaCCCGcCGGGG--CCGg-CCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.